Generation Challenge Programme

GENERAL

http://cropwiki.irri.org/apache2-default/: CropFarm contains links to Generation Challenge Programme, Use Case Database, ICISWiki, GCPWiki, CropForge.
http://cropwiki.irri.org:8080/GCP_UseCaseDb/: List of IRRI/GCP Bioinformatics Use Cases.
http://cropforge.org: A collaborative software development site, providing tools and a centralized workspace for developers to control and manage software development. This site is maintained by the Biometrics and Bioinformatics Unit (BBU) of IRRI.

CIAT

http://www.ciat.cgiar.org/molcas/index.jsp and http://www.ciat.cgiar.org/: MOLCAS (Cassava Molecular Diversity Network), a website with the molecular information that CIAT has gotten in previous cassava diversity studies.

CIP

http://www.potgenebank.org: Inter-genebank Potato Database: GCP contributed to web-databse of microsat marker.
http://hpc.cip.cgiar.org and http://hpc.cip.cgiar.org/webeval/: CIP's High Performance Computing page, an entry point to HPC facilities (and related docs).
http://statistics.riu.cip.cgiar.org:?A searchable database of statistical programs for agriculture/biometrics that allow users to interactively use them -- contributions to web-service version of R statistical routines (in left hand menu via CIPPEX: draft page).
http://statistics.riu.cip.cgiar.org/webservice/statsw/rstatisticsws.php# and http://hpc.cip.cgiar.org/webservices/statisticsws.php#: Statistics Web Services Repository.

CIP / IPGRI

http://www.diva.riu.cip.cgiar.org: A free and open source feographic information system (GIS) for the analysis of biodiversity data from CIP (International Potato Center, Peru) -- contributions to develop DIVA-GIC 5.0/Mismi.
http://web.riu.cip.cgiar.org/ws/workflows/index.html: This document pretends to show some examples of statistical workflow templates using Taverna 0.1.beta.11 from EBI as an educational and practical resource for data analysis. This tutorial is an output about Web Services of Taverna/Web Services workshop given on November 2004 by Martin Senger.

CIRAD

http://umr-pia.cirad.fr/: (in French, soon to be upgraded to a bilingual site).
http://tropgenedb.cirad.fr/: TropgeneDB database for storage of TropGene data coming from SP1.
http://darwin.cirad.fr/darwin: This site allows you to download DARwin, a software package developed for diversity and phylogenetic analysis on the basis of evolutionary dissimilarities.

ICARDA

http://www.icarda.org/generationcp/: Latest News and list of of ICARDA scientists involved with the GCP.
The ICARDA-Generation Genomics Laboratory Management System (LIMS) & Genomic Management System (GeMS) is now available to all on the ICARDA WEB site. Interested parties can download, install, and obtain information about the software on this site. If you would like to make any suggestion or contribute to further developments, please contact Akinnola Akintunde (a.n.akintunde@cgiar.org) or any of the other contact listed on the site.

ICRISAT

http://www.icrisat.org/gt-bt/biometrics.htm: On this page, you can download Allelobin (scroll down to the bottom of the page), a specialized software developed by ICRISAT that classifies observed SSR allele sizes into representative discrete allele sizes. The program uses the least-square minimization algorithm of Idury & Cardon (1997) A Simple Method for Automated Allele Binning in Microsatellite Markers. Genome Research 11:1104-1109.
http://www.icrisat.org/gt1/hpc/hpctest.asp (password required).

INIBAP

IRRI

http://www.iris.irri.org: The rice implementation of the International Crop Information System (ICIS) which is a databse system that provides integrated management of global information on genetic resources and crop cultivars. This includes germplasm pedigrees, field evaluations, structural and functional genomic data (including links to external plant databases) and environmental (GIS) data.
http://www.iris.irri.org/action/genotype?method=getMain: Genotype query page.
http://www.iris.irri.org/generation/: Primary data link at IRRI.
http://www.iris.irri.org:8080/generation/: IRRI's Generation Challenge Program Web Portal.
http://hpc.irri.cgiar.org/: Paracel BLAST Machine 2 Cluster.

IWMI

http://www.iwmidsp.org: The International Water Management Institute?s Data Storehouse Pathway?s Phase III.

GCP Bioinformatics

and Biometrics

* Welcome