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Journal articles 2009

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Asymmetric allele-specific expression in relation to developmental variation and drought stress in barley hybrids Asymmetric allele-specific expression in relation to developmental variation and drought stress in barley hybrids

Von Korff M, Radovic S, Choumane W, Stamati K4, Udupa SM, Grando S1, Ceccarelli S1, Mackay I, Powell W, Baum M, Morgante M (2009). Asymmetric allele-specific expression in relation to developmental variation and drought stress in barley hybrids. The Plant Journal 59(1):14–26. (DOI: 10.1111/j.1365-313X.2009.03848.x).

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Spatial and temporal analysis of non-steady elongation of rice leaves Spatial and temporal analysis of non-steady elongation of rice leaves

Parent B, Conejero G and Tardieu F (2009). Spatial and temporal analysis of non-steady elongation of rice leaves. Plant Cell Environment 32: 1561-1572 (DOI: 10.1111/j.1365-3040.2009.02020.x). Not open access: view abstract

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Genomewide SNP variation reveals relationships among landraces and modern varieties of rice Genomewide SNP variation reveals relationships among landraces and modern varieties of rice

McNally KL,  Childs KL, Bohnert Regina, Davidsond Rebecca M, Zhaoe Keyan, Ulata Victor J, Zellerc Georg, Clark Richard M, Hoeng DR, Bureaug TE, Stokowskih R, Ballingerh DG, Frazerh KA, Coxh DR, Padhukasahasrame B, Bustamantee CD, Weigelf D, Mackill DJ, Bruskiewich RM, Ratschc G, Buell CR, Leung H and Leach JE (2009). Genomewide SNP variation reveals relationships among landraces and modern varieties of rice. Proceedings of the National Academy of Sciences of the United States of America 106 (30):12273–12278 (DOI: 10.1073/pnas.0900992106).

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QTL analysis for resistance to foliar damage caused by Thrips tabaci and Frankliniella schultzei (Thysanoptera: Thripidae) feeding in cowpea [Vigna unguiculata (L.) Walp.] QTL analysis for resistance to foliar damage caused by Thrips tabaci and Frankliniella schultzei (Thysanoptera: Thripidae) feeding in cowpea [Vigna unguiculata (L.) Walp.]

Muchero W, Ehlers JD, and Roberts PA (2009). QTL analysis for resistance to foliar damage caused by Thrips tabaci and Frankliniella schultzei (Thysanoptera: Thripidae) feeding in cowpea [Vigna unguiculata (L.) Walp.]. Molecular Breeding (online: DOI: 10.1007/s11032-009-9307-6).

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Novel genomic tools and modern genetic and breeding approaches for crop improvement Novel genomic tools and modern genetic and breeding approaches for crop improvement

Varshney RK and Dubey A (2009). Novel genomic tools and modern genetic and breeding approaches for crop improvement.  Journal of Plant Biochemistry and Biotechnology 18(2):127-138. (DOI: 10.1007/BF03263311). Not open access: view abstract

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Advances in maize genomics and their value for enhancing gains from molecular breeding Advances in maize genomics and their value for enhancing gains from molecular breeding

Xu Y, Skinner DJ, Wu H, Palacios-Rojas N, Araus JL, Yan J, Gao S, Warburton ML and Crouch JH (2009). Advances in maize genomics and their value for enhancing gains from molecular breeding. International Journal of Plant Genomics 2009:Article ID 957602. (DOI: 10.1155/2009/957602).

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Rapid screening methods to evaluate cowpea cooking characteristics Rapid screening methods to evaluate cowpea cooking characteristics

Yeung H, Ehlers JD, Waniska RD, Alviola JN and Rooney LW (2009). Rapid screening methods to evaluate cowpea cooking characteristics. Field Crops Research 112:245-252 (DOI: 10.1016/j.fcr.2009.03.010). Not open access: view abstract.

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SSR markers reveal diversity in Guinea yam (Dioscorea cayenensis/D. rotundata) core set SSR markers reveal diversity in Guinea yam (Dioscorea cayenensis/D. rotundata) core set

Obidiegwu JE, Kolesnikova-Allen M, Ene-obong EE, Muoneke CO and Asiedu R (2009). SSR markers reveal diversity in Guinea yam (Dioscorea cayenensis/D. rotundata) core set. African Journal of Biotechnology 8(12):2730–2739 (DOI: 10.5897/AJB09.184). (2005-03d)

Abstract: The genetic diversity of 219 accessions of Guinea yam germplasm from Benin, Congo, Côte d' Ivoire, Equatorial Guinea, Gabon, Ghana, Nigeria, Sierra Leone and Togo was accessed using 15 microsatellite loci. High diversity of 0.677 was found among the accessions. An allelic average of 8.06 and polymorphic information content (PIC) value of 0.65 was observed for the markers. The observed heterozygosity value of 0.563 suggests that spontaneous hybridization must have contributed to the ancestry of some of the accessions and improvement by farmers must have been far more often by selection of somatic mutants. The twenty distinct cluster groups generated by the radial phylogram shows that Dioscorea cayenensis and D. rotundata are distinct species with intermediate hybrid forms. There was no relationship between relatedness of the accessions and their geographical area of origin. This study contributes to an increased understanding of the genetic organisation of the core germplasm.

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Marker-assisted backcross breeding to improve quality traits in Myanmar rice cultivar Manawthukha Marker-assisted backcross breeding to improve quality traits in Myanmar rice cultivar Manawthukha

Yi M, Nwe KT, Vanavichit A, Chai-arree W and Toojinda T (2009). Marker-assisted backcross breeding to improve quality traits in Myanmar rice cultivar Manawthukha. Field Crops Research 113(2):178–186. (DOI: 10.1016/j.fcr.2009.05.006). (G4007.03). Not open access: view abstract online

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High level of natural genetic variation in a groundnut (Arachis hypogaea L.) germplasm collection assayed by selected informative SSR markers High level of natural genetic variation in a groundnut (Arachis hypogaea L.) germplasm collection assayed by selected informative SSR markers

Varshney RK, Mahendar T, Aruna R, Nigam SN, Neelima K, Vadez V and Hoisington DA (2009). High level of natural genetic variation in a groundnut (Arachis hypogaea L.) germplasm collection assayed by selected informative SSR markers. Plant Breeding 128 (5):486–494 (DOI: 10.1111/j.1439-0523.2009.01638.x). Not open access: view abstract.

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