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Journal articles 2008

Documents

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Development and use of single nucleotide polymorphism markers for candidate resistance genes in wild peanuts (Arachis spp) Development and use of single nucleotide polymorphism markers for candidate resistance genes in wild peanuts (Arachis spp)

Alves DMT, Pereira RW, Leal-Bertioli SCM, Moretzsohn MC, Guimarães PM and Bertioli DJ (2008). Development and use of single nucleotide polymorphism markers for candidate resistance genes in wild peanuts (Arachis spp). Genetics and Molecular Research 7(3):631–642 (DOI: 10.4238/vol7-3gmr453). Open access; available online.

Abstract: The cultivated peanut (Arachis hypogaea L.) is an allotetraploid of recent origin, with an AABB genome and low genetic diversity. Perhaps because of its limited genetic diversity, this species lacks resistance to a number of important pests and diseases. In contrast, wild species of Arachis are genetically diverse and are rich sources of disease resistance genes. Consequently, a study of wild peanut relatives is attractive from two points of view: to help understand peanut genetics and to characterize wild alleles that could confer disease resistance. With this in mind, a diploid population from a cross between two wild peanut relatives was developed, in order to make a dense genetic map that could serve as a reference for peanut genetics and in order to characterize the regions of the Arachis genome that code for disease resistance. We tested two methods for developing and genotyping single nucleotide polymorphisms in candidate genes for disease resistance; one is based on single-base primer extension methods and the other is based on amplification refractory mutation system-polymerase chain reaction. We found single-base pair extension to be an efficient method, suitable for high-throughput, single-nucleotide polymorphism mapping; it allowed us to locate five candidate genes for resistance on our genetic map.

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Limitations of using Differential Display RT-PCR in the chase for smoke-related genes Limitations of using Differential Display RT-PCR in the chase for smoke-related genes

Soós V, Juhász A, Sebestyén E, Light ME, Van Staden J and Balázs E (2008). Limitations of using Differential Display RT-PCR in the chase for smoke-related genes. Acta Agronomica Hungarica 56(4):435–441. (DOI: 10.1556/AAgr.56.2008.4.9). Not open access: view abstract

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The Promoter Signatures in Rice LEA Genes Can Be Used to Build a Co-expressing LEA Gene Network The Promoter Signatures in Rice LEA Genes Can Be Used to Build a Co-expressing LEA Gene Network

Meier S, Gehring C, MacPherson CR, Kaur M, Maqungo M, Reuben S, Muyanga S, Shih MD, Wei FJ, Wanchana S, Mauleon R, Radovanovic A, Bruskiewich R, Tanaka T, Mohanty B, Itoh T, Wing R, Gojobori T, Sasaki T, Swarup S, Hsing Y and Bajic VB (2008). The Promoter Signatures in Rice LEA Genes Can Be Used to Build a Co-expressing LEA Gene Network. Rice 1 (2):177-187 (DOI: 10.1007/s12284-008-9017-4).

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Genetic diversity studies in Pakistan wheat (Triticum aestivum L) germplasm Genetic diversity studies in Pakistan wheat (Triticum aestivum L) germplasm

Ali Y, Atta BM, Akhter J, Monneveux P and Lateef Z (2008). Genetic diversity studies in Pakistan wheat (Triticum aestivum L) germplasm. Pakistan Journal of Botany 40(5):2087–2097.

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Genetic structure, diversity, and allelic richness in composite collection and reference set in chickpea (Cicer arietinum L.) Genetic structure, diversity, and allelic richness in composite collection and reference set in chickpea (Cicer arietinum L.)

Upadhyaya HD, Dwivedi SL, Baum M, Varshney RK, Udupa SM, Gowda CLL, Hoisington D and Singh S (2008). Genetic structure, diversity, and allelic richness in composite collection and reference set in chickpea (Cicer arietinum L.). BMC Plant Biology 8:106 (DOI: 10.1186/1471-2229-8-106).

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Webstructure and VisualStruct: web interfaces and visualization for structure software implemented in a cluster environment Webstructure and VisualStruct: web interfaces and visualization for structure software implemented in a cluster environment

Jayashree B, Rajgopal S, Hoisington D, Prasanth VP and Chandra S (2008). Webstructure and VisualStruct: web interfaces and visualization for structure software implemented in a cluster environment. Journal of Integrative Bioinformatics 5:89 (DOI 10.2390/biecoll-jib-2008-89).

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Quantitative trait loci (QTL) associated with adaptation to Mediterranean dryland conditions in barley Quantitative trait loci (QTL) associated with adaptation to Mediterranean dryland conditions in barley

von Korff M, Grando S, Del Greco A, This D, Baum M and Ceccarelli S (2008). Quantitative trait loci (QTL) associated with adaptation to Mediterranean dryland conditions in barley. Theoretical and Applied Genetics 117(5):653–669. (DOI 10.1007/s00122-008-0787-2). Not open access: view abstract

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Orchestration of transpiration, growth and carbohydrate dynamics in rice during a dry-down cycle Orchestration of transpiration, growth and carbohydrate dynamics in rice during a dry-down cycle

Luquet D, Clément-Vidal A, This D, Fabre D, Sonderegger N and Dingkuhn M (2008). Orchestration of transpiration, growth and carbohydrate dynamics in rice during a dry-down cycle. Functional Plant Biology 35(8):689–704. (DOI: 10.1071/FP08027). Not open access: view online

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Relationships between carbon isotope discrimination and leaf morphophysiological traits in spring-planted spring wheat under drought and salinity stress in Northern China Relationships between carbon isotope discrimination and leaf morphophysiological traits in spring-planted spring wheat under drought and salinity stress in Northern China

Zhu L, Liang ZS, Xu X, Li SH, Jing JH, Monneveux P (2008). Relationships between carbon isotope discrimination and leaf morphophysiological traits in spring-planted spring wheat under drought and salinity stress in Northern China. Australian Journal of Agricultural Research 59: 941–949 (DOI: 10.1071/AR07476). Not open access: view abstract

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Characterization of AT-rich microsatellites in common bean (Phaseolus vulgaris L) Characterization of AT-rich microsatellites in common bean (Phaseolus vulgaris L)

Blair MW, Buendia HF, Giraldo MC, Métais I and Peltier D (2008). Characterization of AT-rich microsatellites in common bean (Phaseolus vulgaris L). Theoretical and Applied Genetics 118:91-103 (DOI: 10.1007/s00122-008-0879-z). Not open access: view abstract

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