2005 Research Publications

GCP Project Publications

1) Books

There were no books reported in 2005.

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2) Book chapters

There were no books reported in 2005.

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3) Journals and Journal articles 
Not Open Access
Díaz LM, Díaz JM and Blair MW (2005). Diversidad genética de fríjol común (Phaseolus vulgaris L.) en Colombia. Fitotecnia Colombiana 5:2-36.

Ji X, Van den Ende W, Van Laere A, Cheng S and Bennett J (2005). Structure, evolution, and expression of the two invertase gene families of rice. Journal of Molecular Evolution 60:615-634. Abstract

Ji XM, Raveendran M, Oane R, Ismail A, Lafitte R, Bruskiewich R, Cheng SH and Bennett J (2005). Tissue-specific expression and drought responsiveness of cell-wall invertase genes of rice at flowering. Plant Molecular Biology 59:945-964. Abstract

Warburton ML, Ribaut JM, Franco J, Crossa J, Dubreuil P and Betran FJ (2005). Genetic characterization of 218 elite CIMMYT inbred maize lines using RFLP markers. Euphytica 142:97-106. Abstract

Wisser RJ, Sun Q, Hulbert SH, Kresovich S and Nelson R J (2005). Identification and characterization of regions of the rice genome associated with broad-spectrum, quantitative disease resistance. Genetics 169:2277-2293. Abstract

Xia L, Peng K, Yang S, Wenzl P, de Vicente M-C, Fregene M and Kilian A (2005). DArT for high-throughput genotyping of cassava (Manihot esculenta) and its wild relatives. Theoretical and Applied Genetics 110 (6):1092-8. - Abstract

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4) Workshop proceedings and published workshop papers 
Alves A, Ceballos H, Fregene M, Lokko Y,  and Setter T (2005). Identifying the physiological and genetic traits that make cassava one of the most drought tolerant crops. In: Proceedings of the GCP 2005 Annual Research Meeting: 2005 Competitive and Commissioned Projects. Mid-Year Reports, 29 Sep. to 1 Oct. 2005, Rome, Italy. Mexico D.F.:Generation Challenge Program. p.5 - PDF

Atlin, GN, Venuprasad R, Kumar A,  Bernier J, Lafitte HR, Crains J, Amante M, Magbanua T, Sta Cruz T, and Virmani SS (2005). Progress in breeding for improved drought tolerance at IRRI. Paper presented at the Fifth Rice Genetics symposium, 19-23 November 2005, Edsa Shangri-La Hotel, Manila, Philippines from 2005. pp. 32-33.

Bellotti AC, Fregene M, Carabali A, Montoya J, Alves AAC, Tohme J (2005). Wild Manihot species as a source for resistance to anthropod pests of cassava (Manihot esculenta Crantz). Abstracts. Annual Meeting of the Entomological Society of America, 15-18 Dec 2005 (http://esa.confex.com/esa/2005/techprogram/paper_21332.htm). - PDF

Bellotti A, Fregene M, and Alves A. (2005). Development of low-cost technologies for pyramiding useful genes from wild relatives of cassava into elite progeniors. In: Proceedings of the GCP 2005 Annual Research Meeting: 2005 Competitive and Commissioned Projects. Mid-Year Reports, 29 Sep. to 1 Oct. 2005, Rome, Italy. Mexico D.F.:Generation Challenge Program. p.15-17 - PDF

de Vicente M, Glaszmann JC (2005). Molecular Markers for Allele Mining: Proceedings of a workshop, 22–26 August 2005, MS Swaminathan Research Foundation, Chennai, India (2005). International Plant Genetic Resources Institute, Generation Challenge Programme. PDF

Hurtado P, Gutierrez J, Moreno I, Barrera E and Fregene M (2005). Population structure, phenotypic information and association studies in long-generation crops: cassava update.  Proceedings of a workshop on Molecular Marker for Allele Mining, 22-26 August 2005, Chennai, India.

Hurtado P, Marin J, Ospina C, Buitrago C, Castelblanco W, Correa A, Barrera E, Gutierrez J, Santos L, Mafla G, De Vicente C, Hearne S, Ferguson M, Alves A, Ferreira C and Fregene M (2005).  Assessing the global diversity of cassava (Manihot esculenta Crantz) genetic resources, according to simple sequence repeat markers.  Proceedings of a workshop on Molecular Marker for Allele Mining, 22-26 August 2005, Chennai, India.

Hurtado P, Marin J, Ospina C, Buitrago C, Castelblanco W, Correa A, Barrera E, Gutierrez J, Santos L, Mafla G, De Vicente C, Hearne S, Ferguson M, Alves A, Ferreira C and Fregene M (2005). Genotyping of Global Cassava Genetic Resources;  Determination of LD and Association Mapping for Dry Matter Content. Proceedings of the 2005 GCP Annual Research Meeting, 29 September - 1 October 2005, Rome, Italy.

Islam MR, Gregorio GB , Salam MA, Hassan L, Tumimbang-Raiz E, Adorada DL  and Mendoza RD (2005). Molecular markers to salt tolerance in rice: Is it working? In: Abstract, 5th International Rice Genetics symposium. IRRI. Manila, Philippines. pp 115-116.

Ismail AM (2005). Revitalizing marginal lands: discovery of genes for tolerance of saline and phosphorus deficient soils to enhance and sustain productivity. Proceedings of GCP 2005 Annual Research Meeting, 29 October - 1 September 2005, Rome, Italy. pp 3-4.

Upadhyaya HD, Gowda CLL, Buhariwalla HK, Crouch JH (2005). Identifying useful germplasm for crop improvement using core, mini core and molecular marker approaches. p 66 in the Abstracts, International Symposium on Genomic-Based Plant Germplasm Research, 25-28 April 2005, Beijing, China. PDF

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5) Papers presented at workshops and conferences
Alves AAC (2005). Cassava Drought Physiology. Paper presented at the Annual Research Meeting of the Generation Challenge Programme, 29 September - 01 October 2005, Hilton Hotel, Rome, Italy. 

Bellotti A, Fregene M, Alves E, Santos L, Barrera E, Gutierrez J, Alves A, Okogbenin E,  Egesi C, Okai E, Baguma Y, Kawuki R, de Vicente C, and Ceballos H (2005).  Development of Low-Cost Marker Technologies for Pyramiding Useful Gene from Wild Relatives of Cassava into Elite Progenitors. Proceedings of the 2005 GCP Annual Research Meeting, 29 September- 1 October 2005, Rome, Italy.  

Bennett J, Leung H, Nelson R, George ML, Vera Cruz CM, Bernardo M, Sridhar R, Redoña E, Bustamam M, Singh K, Kangle Z, Quang VD, Sripongpankul K, Sharma R, Katiyar S and Huang BC (2005). Reaching the breeders: Asian Rice Biotechnology Network. Paper presented at the GCP Annual Research Meeting, 29 September–1 October 2005, Rome, Italy. PDF

Carrillo G, Wu J, Liu B, Oña I, Sugiyama N, Variar M, Courtois B, Leach J, Goodwin P., Leung H. Vera Cruz C (2005). In silico and molecular approaches for associating candidate defense genes with quantitative resistance to rice blast. Phytopathology 95:S517. PDF

Carrillo G, Wu J, Liu B, Sugiyama N, Oña I, Variar M, Courtois B, Leach JE, Goodwin PH, Leung H,  Vera Cruz CM (2005). Association of candidate defense genes with quantitative resistance to rice blast using molecular and in silico approaches. Paper presented at the 17th Annual Scientific Meeting, Federation of Crop Science Societies of the Philippines, 2-6 May 2005, Cagayan de Oro, Philippines. PDF   Abstract

Fregene M, Glaszmann JC , Roux N, Miginouna J, Marin J, Barrera E, Buitrago C, Gutierrez J, Tohme J, Dixon A, Okogbenin E, and Ceballos H (2005). Status of Molecular Marker–Assisted Selection (MAS) Technology in Clonally Propagated Crops.  Paper presented at the 2005 GCP Annual Research Meeting, 29 September - 1 October 2005, Rome, Italy.

Kochian LV and Magalhaes JV (2005). High resolution mapping and cloning of AltSB, a major aluminum tolerance gene in sorghum. Plenary talk at the Heavy Metals and Phytoremediation Symposium at the American Society of Plant Biologists Meeting, July 18, 2005, Seattle, WA., USA.

Kochian LV and Magalhaes JV (2005). Integrating genomic, molecular genetic and physiological approaches to identify plant aluminum tolerance genes and their associated physiological mechanisms. Plenary talk at the 15th International Plant Nutrition Colloquium, Sept 14-19, 2005, Beijing, China.

Leach J, Liu B, Mauleon R, Manosalva P, Davidson R, Carrillo G, Diaz MG, Bruce M, Nelson R. Vera Cruz C, Leung H (2005). Understanding broad-spectrum, durable resistance in rice. Paper presented at the 5th Rice Genetics Symposium, 19-23 November 2005, Manila Philippines.

Magalhaes JV and Kochian LV (2005). Isolation and characterization of aluminum tolerance genes in the cereals: An integrated functional genomic, molecular genetic and physiological analysis. Paper presented at 2005 Annual Research Meeting of the Generation Challenge Program, Sept 29-Oct 1, 2005, Rome, Italy.

van Eeuwijk FA (2005). An eco-physiological – statistical framework for the analysis of GxE and QTLxE as occurring in abiotic stress trials, with applications to the CIMMYT drought stress programs in tropical maize and bread wheat. Paper presented at Annual Research Meeting Generation Challenge Programme, 29 September - 1 October 2005, Rome, Italy.

Vera Cruz C, Carrillo G, Webb K, Oña I, Begum S, Goodwin P, Wu J, Bin L, Sugiyama N, Jianfa B, Leach J, Leung H (2005).  Sources of genes for crop improvement by biotechnology. Paper presented at the Annual Meeting of the American Phytopathological Society, 30 July - 3 August 2005, Austin TX, USA. PDF

Vera Cruz CM, Mercado EFL, Reveche MYV, Carrillo MGC, Collard BCY, Bernardo M, William M, Hash T, Baum M, Crouch JH (2005). Low-cost marker technologies in major cereal crops: Development of low-cost gene-based trait assay technologies in cereals. Paper presented at the 2005 GCP Annual Research Meeting, 29 September - 1 October 2005, Rome, Italy. PDF

Vera Cruz C, Carrillo G, Webb K, Oña I, Begum S, Goodwin P, Wu J, Bin L, Sugiyama N, Jianfa B, Leach J, Leung H. (2005). Sources of genes for crop improvement by biotechnology. Phytopathology 95:S132. PDF

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6) Working Papers and discussion papers

There were no reported Working papers or Discussion papers in 2005.

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7) Briefs, booklets and brochures  

There were no reported briefs, booklets or brochures reported in 2005.


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8). Learning materials and other resources
Louwaars N. (Ed.) 2005. Genetic Resource Policies and the Generation Challenge Programme. Mexico D.F.: Generation Challenge Programme, 102 p. PDF

Metz T (2005). Collaborative Content Development in the GCP: The Wiki Way - Information brochure distributed at the 2005 GCP Annual Research Meeting, 29 September - 1 October 2005, Rome, Italy. - PDF

(No year provided)--Baum, Michael: Genstat programs to assess marker/allele–trait association in single environment/multi-environment situations (not documented, but used for computations).

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9). Posters
Alves A, Fregene M, Ceballos H, Ferguson M, Setter T (2005). Identifying the physiological and genetic traits related to drought tolerance in cassava. Poster presentation at the 2005 GCP Annual Research Meeting, Rome, Italy, 29 September -01 October 2005. - PDF

Balint-Kurti P (2005). Identification and Analysis of Maize QTL for Southern Leaf Blight and Gray Leaf Spot resistance.   Presented at the Maize Genetics meeting. Lake Geneva, WI; March 10-13, 2005. - PDF

Bellotti A, Fregene M, Castelblanco W, Alzate A, Barrera E, Gutierrez JP, Santos LG, Okogbenin E, Egesi C, Okai E, Kawuki R, Alves A, Ceballos H (2005). Development of Low-Cost Technologies for Pyramiding Useful Genes From Wild Relatives of Cassava into Elite Progenitors. Poster presented at the 2005 GCP Annual Research Meeting, 29 September - 1 October 2005, Rome, Italy.

Bennett J, Lakshmi Praba M, Cairns JE, Lafitte HR, Satoh K, Kikuchi S, Ji XM, Raveendran M, Chen JX (2005). Identifying Genes Responsible for Failure of Grain Formation in Rice and Wheat under Drought (SP2-1). Poster presented at the GCP 2005 Annual Research Meeting, 29 September - 1 October 2005, Rome, Italy.

Bonierbale M, Simon R, Portal L, Baum M, Udupa SM  Jia J , Gao L , Roux N, Kumar S, and Heslop-Harrison P (2005) Conserved Genes and Universal Primers in Bananas and Plantain and Toward Diversity Assessment with Orthologous Gene Markers. GCP ARM Rome.  - PDF

Bruce M, Coughlan S, Zhu T, Bordeos A, Wu CJ, He C, Wang GL, Leung H, and Leach JE (2005). Expression profiling and gene localization of rice lesion mimic mutant spl1. Poster presented at the 5th Rice Genetics Symposium, 18-21 November 2005, Manila, Philippines. - PDF

Carrillo G, Reveche M, Goodwin P, Leach J, Leung H, and Vera Cruz C (2005). In silico analysis and molecular characterization of rice oxalate oxidase, a candidate gene associated with quantitative resistance to rice blast. Poster presented at the 5th Rice Genetics Symposium, 18-21 November 2005, Manila, Philippines. - PDF

Carrillo G, Wu J, Liu B, Oña I, Sugiyama N, Variar M, Courtois B, Leach J, Goodwin P, Leung H, and Vera Cruz C (2005). In silico and molecular approaches for associating candidate defense genes with quantitative resistance to rice blast. Poster presented at the Annual Meeting of the American Phytopathological Society, 30 July - 3 August 2005, Austin TX, USA. - PDF

Carrillo G, Wu J, Liu B, Sugiyama N, Oña I, Variar M, Bhatt JC, Javier E, Goodwin P, Courtois B, Leach J, Leung H, and Vera Cruz C (2005). Associating candidate genes with quantitative resistance to rice blast. Poster presented at the 2005 GCP Annual Research Meeting, 29 Sept -1 October 2005 Hilton Hotel, Rome, Italy. - PDF

Collard B, Reveche MYV, Mercado EFL, Chen J, Carrillo MGC, Bernardo M, Wu J, Redoña E, Kadirvel P, Bustamam M, Verdier V, William M, and Vera Cruz CM. (2005). Low cost, non gel-based DNA marker technologies for marker assisted selection in rice. Poster presented at the 5th Rice Genetics Symposium, 18-21 November 2005 Manila, Philippines. - PDF

Furman BJ, Baum M, Hamwieh A, and Jung C (2005). Genotyping a composite germplasm set of lentil. Presented at the 2005 GCP ARM, 29 September - 1 October 2005, Rome, Italy.

Hazekamp T, Bruskiewich R, Chandra S, Courtois B, Davenport G, Endresen D, Gaiji S,  Moonan F,  Simon R, Sood R, Skofic M (2005). Task 26: Development of the GCP Central Repository. Presented at the 2005 GCP Annual Research Meeting, 29 September - 1 October 2005, Rome, Italy. - PDF

Hearne S, Bishop R, Town C, Ferguson M, Hanson J (2005). Generating Stress Response-Enriched EST Resources for Cowpea. Poster presented at the 2005 GCP Annual Research Meeting, 29 Sep -  1 October 2005, Rome, Italy.

Hund A, Pa-In N, Trachsel S, Liedgens M, Fracheboud Y, Stamp P (2005). Root morphology of drought tolerant and drought sensitive maize genotypes. In: Interdrought-II. The 2nd international conference on integrated approaches to sustain and improve plant production under drought stress, 24-28 September 2005, University of Rome "La Sapienza", Rome, Italy.

Lakshmi Praba M, Chandra Babu R, Cairns JE, Lafitte HR (2005). Comparative physiology of rice and wheat under drought. Poster presented at Interdrought II, 26-30 September 2005, Rome, Italy.

Metz T, Bruskiewich R, Mendoza MJ, Valerio R, Davenport D, Simon R (2005). Collaborative Development Platform for GCP Software and Information Systems. Poster presented in the Generation Challenge Programme Annual Research Meeting, 29 September - 1 October, Rome, Italy - PDF

Pa-In N, Trachsel S, Liedgens M, Hund A, and Stamp P (2005). Quantitative trait loci controlling root and shoot traits of maize (Zea mays L.) under drought stress. Phd symposium, 20-21 October 2005, ETH Zurich, Switzerland.

Pa-In N (2005). Quantitative Trait Loci Controlling Root and Shoot Traits of Maize. 25th Anniversary of cooperation between Kasetsart University (KU) and Swiss Federal Institute of Technology (ETH)* - International Conference on Maize Adaptation to Marginal Environments; 6 – 9 March 2005, Kasetsart University, Thailand.

Upadhyaya HD, Pundir RPS, Hash CT, Hoisington DA, Chandra S, Gowda CLL, Singh S, Reddy VG (2005). Genotyping finger millet germplasm – developing composite collection. Poster presented at Generation Challenge Program meeting, 25 September-1 October 2005, Rome, Italy - PDF

Upadhyaya HD, Bhattacharjee R, Pundir RPS, Hoisington DA, Singh S, Reddy KN (2005). Genotyping pigeonpea composite collection using SSR markers. Poster presented at Generation Challenge Program meeting, 25 September-1 October 2005, Rome, Italy - PDF

Upadhyaya HD, Baum M, Dwivedi SL, Udupa SM, Buhariwalla HK, Furman BJ, Chandra S, Hoisington DA, Crouch JH, Gowda CLL, Singh S (2005).  Mining allelic variation associated with beneficial traits in composite collection of chickpea (Cicer arietinum L.). Poster presented at Generation Challenge Program meeting, 25 September-1 October 2005, Rome, Italy - PDF

Upadhyaya HD, Bhattacharjee R, Bertioli D, Hoisington DA, Pundir RPS, Valls JFM, Chandra S, Singh S, Moretzsohn MC, Leal Bertioli S, Guimaraes P (2005). Genotyping groundnut (Arachis hypogaea) composite collection using SSR markers. Poster presented at Generation Challenge Program meeting, 25 September-1 October 2005, Rome, Italy - PDF

Valkoun J, Choumane W, Konopka J, Zhang J, Grando S, Ceccarelli S, Russell J, and Baum M (2005). Composite Germplasm collection of barley for allele mining and crop improvement. Presented at the 2005 GCP Annual Research Meeting, 29 September - 1 October 2005, Rome, Italy. Abstract

van Eeuwijk FA, Chapman S, Mathews K, Crossa J, Reynolds M, Ribaut J-M, Vargas M, Bink M, Boer M, and Malosetti M (2005). Eco-physiological models for QTLxE; Integrating statistical and physiological approaches. Presented at the 2005 GCP Annual Research Meeting 29 September - 1 October 2005, Rome, Italy. PDF

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10). Media coverage and press releases

Press releases
Generation Challenge Programme (2005). Generation Challenge Program selects Jean-Marcel Ribaut as new director. 13 June 2005. View press release.

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11) Academic dissertations and theses

There were no reported academic dissertations or theses in 2005.

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