HPC_facilities software



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The lower half of this page provides information and instructions for the software facilities delivered by the GCP HPC, the High Performing Computing facilities.  Technical information on the organization of the HPC is found on this page. 

All HPC systems offer the Paracel BLAST routine together with the Paracel Bioview Workbench web interface (http://coe04.ucalgary.ca/bwb/).
For each HPC site several different additional programs and web interfaces are being developed.
HPC Project Manager is Anthony Collins at CIP a.collins@cgiar.org.

Passwords are freely available upon request: contact the HPC Bioinformatics system administrators indicated at the HPC sites below.

  •   HPC at ICRISAT

    • Paracel Bioview Workbench
    • Paracel BLAST service
    • Comparitive genomics pipeline
      • SNP Pipeline
      • MUSCLE
      • ClustalW
      • Tree Puzzle
      • CISPrimer Tool
    • Population genetics section
      • File Format Converter
      • VisualStruct

    Some services and programmes are for internal users only.
    Contact: B Jayashree, b.jayashree@cgiar.ORG

  •    HPC at IRRI

    • Paracel Bioview Workbench
    • Paracel BLAST service
    • EMBOSS (software tools for sequence analysis)
    • RiCES (Rice Cis-Element Searcher)

    Contact: Richard Bruskiewich, r.bruskiewich@cgiar.org

  •    HPC at CIP

    • Paracel Bioview Workbench
    • Paracel BLAST service
    • HPC Structure WebService (investigation of population structure using multi-locus genotype data, including microsatellites, RFLPs and SNPs)

    You can enter the CIP HPC facility as guest, with username CIP-HPCTEST, password: hpctest
    Contact: Reinhard Simon, r.simon@cgiar.org

  •    HPC at ILRI

    • Paracel Bioview Workbench
    • Paracel BLAST service
    • Artemis
    • ACT
    • Interproscan
    • EMBOSS
    • wEMBOSS
    • Primer3
    • SignalP
    • STADEN
    • Similarity Searching
    • FASTA

    Contact: Etienne de Villiers, e.villiers@cgiar.org


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GCP Bioinformatics
and Biometrics