GCP Blog Connect with us GCP on Facebook Follow GCP on Twitter GCP on LinkedIn Subscribe to GCP Newsletter Subscribe to our RSS feeds

Product Catalogue

The Product Catalogue is an evolving  compilation of  a diverse array of  products derived from tangible outputs of projects supported in whole or in part by the CGIAR Generation Challenge Programme.  As projects mature, more products are added. Products are listed under the specific project crop or ‘Global’.   Under each crop, you will find diverse types of products, such as  germplasm, markers, genomics resources and informatics applications.  ‘Global’ includes products  applicable to several or all crops and generally includes informatics tools and learning materials. We consider all catalogued products as useful. However, our user base is highly varied and includes upstream as well as downstream plant scientists. Not all products will be of direct interest to breeders. Consequently, a BUL (Breeding Use Level) rating has been provided to indicate the direct usefulness of products to breeders:

Breeding Use Levels
BUL Description
1 Ready to use for breeding
(I.e. predictive markers, germplasm of acceptable agronomic type containing a well-defined and characterized trait, and etc.).
2 Qualified use for breeding
(i.e germplasm in which trait genetics have not been well defined or markers that may be informative but not necessarily predictive).
3 Indirectly useful for breeding
(i.e. genomic resources from which downstream products for breeding are developed and many informatics applications).
4 Not developed for breeding, per se
(i.e. miscellaneous information as socio-economic reports).

How to use this table:

  • With the exception of BUL, you can sort by column by clickling on the title of each column
  • You can search for any term, word, or keyword by typing it into the search box above the table
  • You can export data by clicking on the CSV link on the top left-hand side of this page

Product Catalogue

  •  
COM_FABRIK_ORDER

Crop|Area

COM_FABRIK_ORDERProduct COM_FABRIK_ORDER

Type

COM_FABRIK_ORDERDescription COM_FABRIK_ORDERAccess BUL
Rice Arrays for SNP discovery in rice. Genomic Resources High densitiy oligonucleotide arrays using Affymetrix technology for 100 Mb of the rice genome developed by Perlegen Sciences, Inc., USA Contact: K.McNally, IRRI, The Philippines

k.mcnally@cgiar.org
Maize SNP Markers for Downy Mildew resistance in maize Informative Markers SNP markers for downy mildew resistance associated with selected candidate genes obtained from coding regions or flanking sequence based on chromosomal location around SSR markers derived from association mapping of 60 elite lines from Thailand Contact: Drr. Chalermpol Phumichai, Kasetsart University, Bangkok, Thailand

chalermpol.ph@gmail.com
Chickpea A molecular genetic map of chickpea Genomic Resources A Genetic map based on 501 Conserved Orthologous Gene SNP markers. Contact: Dr. Douglas Cook, University of California, Davis

drcook@ucdavis.edu
Common Bean A molecular genetic map of common bean Genomic Resources A Genetic map based on 592 SNP markers for Conserved Orthologous Genes. Contact: Dr. Douglas Cook, University of California, Davis

drcook@ucdavis.edu
Groundnuts A molecular genetic map of groundnut Genomic Resources A genetic map based on 498 SNP markers for Conserved Orthologous Genes. Contact: Dr. Douglas Cook, University of California, Davis

drcook@ucdavis.edu
Cowpea A molecular genetic map of cowpea Genomic Resources A genetic map based on 527 SNP markers for Conserved Orthologous Genes. Contact: Dr. Douglas Cook, University of California, Davis

drcook@ucdavis.edu
Cassava Drought resistant, disease resistant cassava genotypes Germplasm Four drought resistant, disease resistant cassava genotypes selected from a large pool of genotypes for generation of mapping populations. TMS92/0057 Drought resistant, CMD resistant and moderate yield, TMS92/0067 Drought resistant, CMD resistant, moderate yield, TMS98/0581 Drought resistant, CMD re... (read more) Contact: Dr. Emannuel Okogbenin, National Root Crops Research Institute (NRCRI), Nigeria

eokogbenin@yahoo.com
Rice Rice transcriptome dataset for drought stress. Genomic Resources A high-quality transcriptome dataset (~44K genes) for two genotypic backgrounds under control, mild and severe drought stress providing a rich resource for data mining. Contact: Dr. Soshi Kikuchi, NIAS - National Institute of Agrobiological Sciences, Japan

skikuchi@nias.affrc.go.jp
Global Training materials for project design and data analysis Training Materials Training materials encompassing data quality, general statistical theory, experimental design, analysis of single and multiple trials, GxE analysis, QTL and association mapping, diversity analysis, and selection response theory. Downloadable on-line from:

http://mbp.generationcp.org/confluence/display/MBP/Activity+3.2.4+Training+material
Common Bean SNP polymorphism in common bean types Dataset Data on degree of SNP polymorphism among different races and market classes of common bean Contact Steve Beebe, CIAT, Cali, Colombia

s.beebe@cgiar.org
Common Bean Disease and insect resistant common bean breeding lines. Germplasm 200 common bean breeding lines with combinations of BCMNV, bruchid or CBB resistance Lines selected for CBB resistance are being produced as clean seed in South Africa for shipment to partners in Africa. Lines selected for bruchid resistance are being prepared for shipment from Colombia. Seed is limited; Tropical Legume project partners are first priority.
Contact Steve Beeb... (read more)
Sorghum Male sterile isogenic elite lines of Mali sorghum Germplasm Isogenic male sterile (ms3) versions of 2 elite lines (Grinkan and Keninkeni) obtained by MAS. Contact Niaba Teme, IER, Mali

temeniaba@yahoo.com
Rice Phosphorus deficiency-tolerant rice breeding lines Germplasm A set of BC2F3 and BC3F2 introgression lines with the phosphorus efficiency uptake gene, Pup1, in rice varieties IR64 and IR74 Contact Sigrid Heuer, IRRI, Los Banos, Philippines

S.HEUER@cgiar.org
Rice Indonesian upland phosphorus deficiency-tolerant rice breeding lines Germplasm A set of BC2F3 rice introgression lines with the phosphorus efficiency uptake gene,Pup1, in Indonesian upland varieties (Dodokan, Situ Gagendit and Batur) Contact S. Heuer, IRRI, Los Banos, Philippines

S.HEUER@cgiar.org
Rice A database storing the data from several rice microarray systems Informatics Application/Tool A database storing the data from several rice microarray systems established, and a pipeline system developed for the cis-element search in the promoter region of the genes which turned out to be the same cluster after the microarray experiments. Contact S. Kikuchi,National Institute of Agrobiological Sciences (NIAS), Japan

skikuchi(0)nias.affrc.go.jp

online at: http://www.dna.affrc.go.jp/database/
Cassava An improved physical genetic map of cassava Genomic Resources An improved physical map, based on bacterial artificial chromosomes (BACs), of cassava and nearly 800 candidate SNP markers, of which over 700 were validated by genotyping the mapping population and the diversity panel of cassava genotypes. Of those SNPs, 556 were polymorphic in the mapping populati... (read more) Contact Pablo Rabinowicz, University of Maryland School of Medicine

prabinowicz(0)som.umaryland.edu
Rice Nested Association Mapping (NAM) population of rice Germplasm A meta-population of 4,000 recombinant lines suitable for Nested Association Mapping studies, with a focus on African constraints for rice production. On request from IRRI Genebank, IRRI, Los Banos, The Philippines beginning September 2012
r.hamilton@cgiar.org

Also contact Mathia Lorieux, Principal Investigator, IRD/CIAT, Cali, Colombia
m.lorieux@cgiar.org
Common Bean INTA Sequia, a new disease-resistant, drought- and heat-tolerant common bean variety released in Nicaragua. Germplasm Disease-resistant, drought- and heat-tolerant, adapts to the driest regions, high-yield, rapid grain growth from enhanced nutrient uptake efficiency, has farmer- and market-appeal. Contact Aurelio Llano at Instituto Nicaragüense de Tecnología Agropecuaria (INTA), Nicaragua

aureliollano(0)gmail.com
Cassava UMUCASS33, a disease-resistant, high-yielding variety of cassava released in Nigeria, 2010 Germplasm This new variety brings together the best from South American and African cassava. South America is cassava’s centre of origin. South American cassava has a higher nutritional content, while African cassava tends to be more resilient to pests, disease and harsh environments. CIAT provided the Sout... (read more) Contact Dr Emmanuel Okogbenin (eokogbenin(0)yahoo.com) or Dr Chiedozie Egesi (cegesi(0)yahoo.com), National Root Crops Research Institute, NIgeria
Maize MTPEH200803 and MTPEH200804, high-yielding disease resistant hybrids developed in Kenya. Germplasm Both MTPEH200803 and MTPEH200804 are high yielding , Grey Leaf Spot and Maize Streak Virus reistant, and short stature. Both have performed well in the dry coastal lowlands; however, the former is adapted to sandy soils and the latter to clay soils. Contact James Gethi, Kenyan Agricultural Research Institute

jgethi@wananchi.com