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Product Catalogue

The Product Catalogue is an evolving  compilation of  a diverse array of  products derived from tangible outputs of projects supported in whole or in part by the CGIAR Generation Challenge Programme.  As projects mature, more products are added. Products are listed under the specific project crop or ‘Global’.   Under each crop, you will find diverse types of products, such as  germplasm, markers, genomics resources and informatics applications.  ‘Global’ includes products  applicable to several or all crops and generally includes informatics tools and learning materials. We consider all catalogued products as useful. However, our user base is highly varied and includes upstream as well as downstream plant scientists. Not all products will be of direct interest to breeders. Consequently, a BUL (Breeding Use Level) rating has been provided to indicate the direct usefulness of products to breeders:

Breeding Use Levels
BUL Description
1 Ready to use for breeding
(I.e. predictive markers, germplasm of acceptable agronomic type containing a well-defined and characterized trait, and etc.).
2 Qualified use for breeding
(i.e germplasm in which trait genetics have not been well defined or markers that may be informative but not necessarily predictive).
3 Indirectly useful for breeding
(i.e. genomic resources from which downstream products for breeding are developed and many informatics applications).
4 Not developed for breeding, per se
(i.e. miscellaneous information as socio-economic reports).

How to use this table:

  • With the exception of BUL, you can sort by column by clickling on the title of each column
  • You can search for any term, word, or keyword by typing it into the search box above the table
  • You can export data by clicking on the CSV link on the top left-hand side of this page

Product Catalogue

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COM_FABRIK_ORDER

Crop|Area

COM_FABRIK_ORDERProduct COM_FABRIK_ORDER

Type

COM_FABRIK_ORDERDescription COM_FABRIK_ORDERAccess BUL
Rice A SNP data set for rice Genomic Resources Data set of SNP calls at 259,721 unique sites by a model-based approach across 20 varieties for development and discovery. Genome-wide SNP discovery was undertaken by re-sequencing multiple, diverse rice varieties through DNA-DNA hybridization on high density oligonucleotide arrays. http://www.oryzasnp.org/
Rice Anchor markers for inter-specific crosses with Oryza sativa Genomic Resources A set of 125 SSR anchor markers along the rice genome that provides wide identification of polymorphisms across wild rice species (AA genome). Each anchor is represented by 3 SSR loci each. Orjuela J., A. Garavito, M. Bouniol, J.D. Arbelaez, L. Moreno, J. Kimball, G. Wilson, J.F. Rami, J. Tohme, S.R. McCouch, M. Lorieux. 2010. A Universal Core Genetic Map for rice. Theoretical and Applied Genetics, 120:563-572

m.lorieux@cgiar.org
Rice Chinese rice hybrids with drought tolerance. Germplasm A new hybrid cultivar, Liaoyou 5224, derived from the cross between a selected DT IL, C5224 and a CMS line - Liao5216A approved to be released to farmers in the Liaoning province and recommended for multilocal testing in North China; Another new hybrid cultivar, Liaoyou 5249 derived from the cross b... (read more) Contact Z.K. Li, Chinese Academy of Agricultural Sciences (CAAS), Beijing, China

lizhk@caas.net.cn
Rice Advanced blast resistant rice lines Germplasm Six Vandana-like lines with added blast resistance from Morobereken ready for testing in upland sites in India (Vandana is a drought tolerant upland variety but deficient in disease resistance in the upland environment) Contact Rebecca Nelson, Cornell University, Ithaca, NY USA

rjn7@cornell.edu
Rice Bacterial Blight resistant rice accessions Germplasm Rice accessions with relatively high resistance to most known pathogen races of bacterial blight in the Philippines Contact R. Nelson,Cornell University, Ithaca, NY USA

jmn99@cornell.edu
Rice Disease and drought resistance rice lines Germplasm Elite progenies from Moroberekan/Vandana cross showing resistance to blast, drought and, in some cases, ShB were identified in India and the Philippines. Contact R. Nelson,Cornell University, Ithaca, NY USA

jmn99@cornell.edu
Rice Interspecific rice line (Oryzae sativa x O. glaberrima) resistant to rice blast and drought in Africa Germplasm One interspecific line (SIK400-b-56-1-361-18)with good performance in terms of leaf rolling and reduced leaf burning, ability to recover from drought, and resistance to leaf blast Contact Marie Noelle Ndiondjop, AfricaRice, Benin

M.NDJIONDJOP@cgiar.org
Rice Oryzae glaberrima accessions resistant to Bacterial Leaf Blight Germplasm 20 accessions of O. glaberrima found resistant to one of three new African races of Bacterial Leaf Blight Contact Marie Noelle Ndjiondiop, AfricaRice, Benin

M.NDJIONDJOP@cgiar.org
Rice Fertile interspecific (Oryzae sativa x O. glaberrima) lines Germplasm Seed of five new fully fertile interspecific (Oryzae sativa x O. glaberrima) lines with desirable agronomic traits available for crossing Contact Marie Noelle Ndjiondjop, AfricaRice, Benin

M.NDJIONDJOP@cgiar.org
Rice A CSSL population of Oryza sativa x O. rufipogon Germplasm A Chromosome Segment Substitution Line working population of about 60 interspecific lines bearing introgressed genome segments from the AA genome of the wild species, Oryza rufipogon Contact M. Lorieux, CIAT/IRD, Cali, Colombia

m.lorieux@cgiar.org
Rice A CSSL population of Oryza sativa x O. glumaepatula Germplasm A Chromosome Segment Substitution Line working population of about 60 interspecific lines bearing introgressed genome segments from the AA genome of the wild species, Oryza glumaepatula Contact M.Lorieux, CIAT/IRD, Cali, Colombia

m.lorieux@cgiar.org
Rice A CSSL population of Oryza sativa x O. meridonalis Germplasm A Chromosome Segment Substitution Line working population of about 60 interspecific lines bearing introgressed genome segments from the AA genome of the wild species, Oryza meridionalis Contact M. Lorieux, CIAT/IRD, Cali, Colombia

m.lorieux@cgiar.org
Rice A CSSL population of Oryza sativa x O. glaberrima Germplasm A Chromosome Segment Substitution Line working population of about 60 interspecific lines bearing introgressed genome segments from the AA genome of the cultivated species, Oryza glaberrima, in a O. sativa subspecies japonica background Contact M. Lorieux, CIAT/IRD, Cali, Colombia

m.lorieux@cgiar.org
Rice Interspecific rice lines (Oryza sativa x O. glaberrima) with drought tolerance Germplasm A set of interspecific, Oryza sativa x O. glaberrima, chromosome segment substitution lines identified with superior drought tolerance in Africa Contact B. Manneh, AfricaRice, Benin

b.manneh@cgiar.org
Rice Phosphorus deficiency-tolerant rice breeding lines Germplasm A set of BC2F3 and BC3F2 introgression lines with the phosphorus efficiency uptake gene, Pup1, in rice varieties IR64 and IR74 Contact Sigrid Heuer, IRRI, Los Banos, Philippines [NOT AVAILABLE UNTIL 2012]

S.HEUER@cgiar.org
Rice Indonesian upland phosphorus deficiency-tolerant rice breeding lines Germplasm A set of BC2F3 rice introgression lines with the phosphorus efficiency uptake gene,Pup1, in Indonesian upland varieties (Dodokan, Situ Gagendit and Batur) Contact S. Heuer, IRRI, Los Banos, Philippines [NOT AVAILALBLE UNTIL 2012]

S.HEUER@cgiar.org
Rice A database storing the data from several rice microarray systems Informatics Application/Tool A database storing the data from several rice microarray systems established, and a pipeline system developed for the cis-element search in the promoter region of the genes which turned out to be the same cluster after the microarray experiments Contact S. Kikuchi,National Institute of Agrobiological Sciences (NIAS), Japan

http://hpc.irri.cgiar.org/tool/nias/ces
Rice OryGenesDB: an interactive tool for rice reverse genetics Informatics Application/Tool The OryGenesDB CIRAD-based webservice originated from the the Oryza sativa database.

Sequence information is linked with related molecular data from external rice molecular resources (cDNA full length, Gene, EST, Markers, Expression data, etc). Data sources are available for rice (spp... (read more)
Viewable and downloadable at the Generation Challenge Program website (www.generationcp.org) and at http://orygenesdb.cirad.fr/

http://www.generationcp.org/ready_to_use_
software_packages
Rice PaddyMap: a data base for selection of rice genetic markers Informatics Application/Tool Paddy Map provides means to easily and quickly choose a series of genetic markers to be used to genotype a population derived from a specific cross. available online

http://mapdisto.free.fr/PaddyMap/
Rice Saltol markers for rice Informative Markers Three markers identified for introgression of Saltol into elite varieties. At Dhaka University, three varieties bred for the salinity affected areas in Satkhira for Boro (dry winter season) are being tested again in the saline zone in Satkhira for the 3rd consecutive year, three markers identified ... (read more) Contact Abdelbagi Ismael, International Rice Researach Institute (IRRI), los Banos, Philippines

abdelbagi.ismael@cgiar.org