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Product Catalogue

The Product Catalogue is an evolving  compilation of  a diverse array of  products derived from tangible outputs of projects supported in whole or in part by the CGIAR Generation Challenge Programme.  As projects mature, more products are added. Products are listed under the specific project crop or ‘Global’.   Under each crop, you will find diverse types of products, such as  germplasm, markers, genomics resources and informatics applications.  ‘Global’ includes products  applicable to several or all crops and generally includes informatics tools and learning materials. We consider all catalogued products as useful. However, our user base is highly varied and includes upstream as well as downstream plant scientists. Not all products will be of direct interest to breeders. Consequently, a BUL (Breeding Use Level) rating has been provided to indicate the direct usefulness of products to breeders:

Breeding Use Levels
BUL Description
1 Ready to use for breeding
(I.e. predictive markers, germplasm of acceptable agronomic type containing a well-defined and characterized trait, and etc.).
2 Qualified use for breeding
(i.e germplasm in which trait genetics have not been well defined or markers that may be informative but not necessarily predictive).
3 Indirectly useful for breeding
(i.e. genomic resources from which downstream products for breeding are developed and many informatics applications).
4 Not developed for breeding, per se
(i.e. miscellaneous information as socio-economic reports).

How to use this table:

  • With the exception of BUL, you can sort by column by clickling on the title of each column
  • You can search for any term, word, or keyword by typing it into the search box above the table
  • You can export data by clicking on the CSV link on the top left-hand side of this page

Product Catalogue

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COM_FABRIK_ORDER

Crop|Area

COM_FABRIK_ORDERProduct COM_FABRIK_ORDER

Type

COM_FABRIK_ORDERDescription COM_FABRIK_ORDERAccess BUL
Cowpea QTL for premature senescence and maturity in cowpea Genomic Resources A map of QTL for drought stress-induced premature senescence and maturity in cowpea Contact: Tim Close, University of California-Riverside, USA
timothy.close@ucr.edu

Muchero W, Ehlers J, Close T and Roberts P (2009). Mapping QTL for drought stress-induced premature senescence and maturity in cowpea [Vigna unguiculata (L.) Walp.]. Theoretical and Applied Geneti... (read more)
Cowpea A cowpea germplasm reference set Germplasm A reference set of 374 accessions (cowpea minicore germplasm) Contact D. Dumet, International Institute of Tropical Agriculture, Ibadan, Nigeria

d.dumet@cgiar.org
Cowpea A microarray chip for expression analysis in cowpea. Informative Markers 41949 EST sequences from drought stressed and non-stressed drought susceptible and tolerant cowpea materials generated, representing 16954 unigenes. Contact S. Hearne, Interantional Institute of Tropical Agriculture (IITA), Lagos, Nigeria

s.hearne@cgiar.org
Cowpea Markers for Striga resistance in cowpea Informative Markers SCARs MahSe 2 marker to SG1 and SG3 resistance, SCARs AGG/CTT 200B to SG5 resistance; Potential parents selected in the field conditions for further Striga resistance breeding; The present project seeks to develop a MAS strategy for cowpea that will allow rapid breeding of Striga resistant varieties... (read more) Contact S. Muranaka,JIRCAS (Japan International Research Center for Agricultural Science), Tokyo, Japan

smuranaka@affrc.go.jp
Cowpea QTLs for resistance to root-knot nematode, flower and foliar thrips, bacterial blight and ashy-stem blight Genomic Resources Two RIL sets were phenotyped for resistance to root knot nematodes and Macrophomina phaseolina. QTLs for resistance to both diseases were identified from RIL anlaysis and confirmed by analysis of closely relatived cultivars that differed in resistance. Contact Jeff Ehlers, Unversity of California - Riverside, Riverside, CA USA (jeff.ehlers@ucr.edu)

Muchero, W., J.D. Ehlers, T.J. Close and P.A. Roberts. 2011. Genic SNP markers and legume synteny reveal candidate genes underlying QTL for Macrophomina phaseolina resistance and maturity... (read more)
Groundnuts DaRT marker array for groundnut Genomic Resources An array of DArT markers for groundnut discovered by screening a library of several thousand fragments from a genomic representation prepared from a pool of DNA samples that encompass the diversity of the species. The use of the microarray platform make s this tool very efficient because all marker... (read more) Available through Diversity Arrays Technology Pty Ltd (DArT P/L)

http://www.diversityarrays.com
Groundnuts A validated Groundnut germplasm reference collection Genomic Resources The Groundnut Reference Set is composed of a core set of accessions representing the genetic diversity of the entirety of the ICRISAT germplasm bank collection. The reference set represents a critical resource for plant scientists to study new adaptative traits, discover new favorable alleles and al... (read more) The International Crops Research Institute for the Semi-Arid Tropics(ICRISAT) Germplasm Bank
Groundnuts A groundnut genetic map Genomic Resources The first cultivated groundnut (Arachis hypogaea L.) map derived from a RIL population between TAG24 and ICGV86031 Varshney RK, Bertioli DJ, Moretzsohn MC, Vadez V, Krishnamurthy L, Aruna R, Nigam SN, Moss BJ, Seetha K, Ravi K, He G, Knapp SJ, Hoisington DA (2008). The first SSR-based genetic linkage map for cultivated groundnut (Arachis hypogaea L.). Theoretical and Applied Genetics 118: 729-739 (DOI: 10.100... (read more)
Groundnuts A groundnut BAC library Genomic Resources A Bacteria Artificial Chromosome (BAC) groundnut library with approximately 80,000 clones Guimarães PM, Garsmeur O, Proite K, Leal-Bertioli SCM, Seijo G, Chaine C, Bertioli DJ, D`Hont A. (2008) BAC libraries construction from the ancestral diploid genomes of the allotetraploid cultivated peanut. BMC Plant Biology 8:14.
Groundnuts Sources of resistance to Groundnut Rosette Virus Germplasm From 300 genotypes screened from the GCP reference collection, four sources of resistance to Groundnut Rosette Virus were identified: ICG 14705, ICG 13099, ICGV-SM 03701, ICGV-SM 03710 H. Upadaya, International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Patancheru, India

h.upadhyaya@cgiar.org
Groundnuts Sources of resistance to Groundnut Early Leaf Spot Germplasm From 300 genotypes screened from the GCP reference collection, six sources of resistance to Early Leaf Spot were identified: ICGV-SM 95741, ICGV-SM 07543, ICG 405, ICG 12276, ICG 12672, ICGV-SM 06684, ICG 6022/(FDRS)4/ICG4440/ICG6222 H. Upadaya, International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Patancheru, India

h.upadhyaya@cgiar.org
Groundnuts Sources of resistance to Groundnut Rust Germplasm From 300 genotypes screened from the GCP reference collection, five sources of resistance to Groundnut Rust were identified: ICG 1703, ICG 10010, ICG 4729, ICG 6022, ICG 7897 H. Upadaya, International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Patancheru, India

h.upadhyaya@cgiar.org
Groundnuts Sources of drought tolerance in Groundnut Germplasm Highly contrasting drought tolerant germplasm identified from 300 genotypes screened for the GCP reference collection H. Upadaya, International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Patancheru, India

h.upadhyaya@cgiar.org
Groundnuts Drought-tolerant groundnut synthetics Germplasm (A. batizocoi K9484 x A. stenosperma V10309)4x and (A. gregoryii V6389 x A. stenosperma V10309)4x

Supplementary information:

Foncéka D, Hodo-Abalo T, Rivallan R, Faye I, Sall MN, Ndoye O, Fávero AP, Bertioli DJ, Glaszmann JC, Courtois B, Rami JF. (2009) Genetic mappin... (read more)
David Bertioli at davidbertioli@unb.br
Groundnuts Gene markers for peanut Informative Markers Markers were developed as genomic resources necessary for molecular breeding of peanut, and for the incorporation of wild genes into cultivated peanut to produce improved varieties of groundnut. http://www.biomedcentral.com/content/supplementary/1471-2229-7-7-S1.xls

http://cgi-www.daimi.au.dk/cgi-chili/phyfi/go
Groundnuts QTLs for disease resistance in groundnut Informative Markers 34 sequence-confirmed candidate disease resistance genes and five QTL mapped on the reference AA-genome population. Leal-Bertioli, SCM, José, ACFV; Alves-Freitas, DMT, Moretzsohn, MC, Guimarães, PM, Nielen, S, Vidigal, B, Pereira, RW, Pike, J, Fávero, AP, Parniske, M, Varshney, R, Bertioli, DJ. (2009) Identification of candidate genome regions controlling disease resistance in Arachis. BMC Plant Biology, 9:112... (read more)
Global QTL for leaf growth in maize, wheat and rice Genomic Resources QTLs of the P1P2 population for leaf growth and ASI, QTLs of leaf length in maize, wheat and rice for well watered and water deficient plants, Models of silk and leaf growth for maize, Elements of models for rice leaf growth Sadok W, Naudin Ph, Boussuge B, Muller B, Welcker C, Tardieu F (2007) Leaf growth rate per unit thermal time follows QTL-dependent daily patterns in hundreds of maize lines under naturally fluctuating conditions. Plant Cell and Environment 30, 135-146

Muller B, Bourdais G; Reidy B, Be... (read more)
Global NGS Data Analysis Pipe Line Genomic Resources This pipeline is capable in identifying the SNPs between the parental genotypes using different algorithms Contact T. Shah, International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Patancheru, India (TM.shah@cgiar.org)

http://hpc.icrisat.cgiar.org/ngs/
Global A Central Registry application for registration and storage of project datasets Informatics Application/Tool A fully functional Central Registry application developed to allow registration of datasets, uploading of data files and registration of web service entry points. Section on GCP wiki site on assessments of analysis tools for SP1, SP2 and SP3; Technical Management of Central Registry, Strengthening ... (read more) http://gcpcr.grinfo.net/
Global iMAS, an integrated decision support system Informatics Application/Tool The Integrated Marker-Assisted Selection System (iMAS) software is an integrated molecular breeding analysis platform. The GCP supported the development of the iMAS. The iMAS provides simple-to-follow guidelines to assist users with the selection of the most appropriate experimental design and data ... (read more) Direct download from Generation Challenge Programme

http://www.generationcp.org/ready_to_use_software_packages