2010
Gutierrez A, Carabali S, Giraldo OX, Martinez CP, Correa F, Prado G, Tohme J and Lorieux M (2010). Identification of a rice Stripe Necrosis Virus resistance locus and yield component QTLs using Oryza sativa x O. glaberrima introgression lines. BMC Plant Biology 10:6. Abstract

Parent B, Turc O, Gibon Y Stitt M, Tardieu F (2010). Coordination of responses to temperature of developmental processes allows modelling temperature-compensated rates. Journal of Experimental Botany (online). DOI:10.1093/jxb/erq003.

Rudi N, Norton GW , Alwang J, and Asumugha G (2010). Economic impact analysis of marker-assisted breeding for resistance to pests and post harvest deterioration in cassava. African Journal of Agricultural and Resource Economics 4(2). (in press). 

Tardieu F and Tuberosa R (2010). Dissection and modelling of abiotic stress tolerance in plants. Current Opinion in Plant Biology (online). DOI:10.1016/j.pbi.2009.12.012. Abstract 

Waddington SR, Li X, Dixon J, Hyman G and de Vicente MC (2010). Getting the focus right: production constraints for six major food crops in Asian and African farming systems. Food Security (online). DOI: 10.1007/s12571-010-0053-8. Abstract

Yan J, Yang X, Sanchez H, Shah T, Li J, Warburton ML, Yi Z, Crouch J, Xu Y (2010).  High-throughput SNP genotyping with the GoldenGate assay in maize.  Mol. Breeding (accepted for publication). 

2009
Alpuerto VEB, Norton GW , Alwang J, and Ismail AM (2009). Economic Impact Analysis of Marker-Assisted Breeding for Tolerance to Salinity and Phosphorous Deficiency in Rice. Review of Agricultural Economics 31 (4): 779–792.  PDF

Asante MD,  Kovach MJ, Huang L, Harrington S, Dartey PK, Akromah R, Semon M, McCouch S (2009). The genetic origin of fragrance in NERICA1. Molecular Breeding (online). DOI 10.1007/s11032-009-9382-8. PDF

Bernier J, Atlin GN, Serraj R, Kumar A, Spaner D. (2008). Breeding upland rice for drought resistance. J. Sci. Food Agric. 88: 927–939.

Bernier J, Serraj R, Kumar A, Venuprasad R, Impa S, Gowda V, Owane R, Spaner D, Atlin G. (2009). Increased water uptake explains the effect of qtl12.1 a large-effect drought-resistance QTL in upland rice. Field Crop Res. 110(2): 139-146.

Bertioli D, Moretzsohn M, Madsen LH, Sandal N, Leal-Bertioli S, Guimarães P, Hougaard BK, Fredslund J, Schauser L, Nielsen AM, Sato S, Tabata S, Cannon S and Stougaard J. (2009) An analysis of synteny of Arachis with Lotus and Medicago sheds new light on the structure, stability and evolution of legume genomes. BMC Genomics 2009, 10:45 (DOI: 10.1186/1471-2164-10-45). PDF


Blair MW, Muñoz-Torres M, Giraldo MC, Pedraza F (2009). Development and diversity of Andean-derived, gene-based microsatellites for common bean (Phaseolus vulgaris L.) BMC Plant Bio 2009, 9:100. DOI:10.1186/1471-2229-9-100.  PDF

Bruce M, Hess A, Bai J, Mauleon R, Diaz MG, Sugiyama N, Bordeos A, Wang G-L, Leung H and Leach JE (2009). Detection of genomic deletions in rice using oligonucleotide microarrays. BMC Genomics 10:129. DOI:10.1186/1471-2164-10-129. PDF

Centritto M, Lauteri M, Monteverdi MC, Serraj R. (2009). Leaf gas exchange, carbon isotope discrimination and grain yield in contrasting rice genotypes subjected to water deficits during reproductive stage. J. Exp. Bot. 60: 2325-2339.

Chen W-L, Jing R-L, Liu H-M and CHang X-P (2009). Genetic Selection and Trait with Jinmai 47 Analysis of Introgression Lines Genetic Background. Journal of Triticeae Crops. 29(2):206—211. PDF

Chenu K, Chapman SC, Tardieu F, McLean G, Welcker C, Hammer GL (2009). Simulating the Yield Impacts of Organ-Level Quantitative Trait Loci Associated with Drought Response in Maize - A "Gene-to-Phenotype" Modeling Approach. Genetics 183: 1507–1523. DOI:10.1534/genetics.109.105429. Abstract

Chin HJ, Lu X, Haefele SM, Gamuyao RL, Ismail AM, Wissuwa M, Heuer S (2009). Development and application of gene-based markers for the major rice QTL Phosphate uptake 1 (Pup1). Submitted.

Courtois B, Ahmadi N, Khowaja F, Price AH, Rami JF, Frouin J, Hamelin C, Ruiz (2009). Rice Root Genetic Architecture: Meta-analysis from a Drought QTL Database. Rice 2:15-34

Cseh A, Kruppa K and Molnár I (2009). Incorporation of a winter barley chromosome segment into cultivated wheat and its characterization with GISH, FISH and SSR markers. Cereal Res. Commun. 37. Supplement 2: 321-324. DOI: 10.1556/297 CRC.37.2009.Suppl.2.

Ehlers JD, Sanden BL, Frate CA and Roberts PA (2009). Registration of ‘California Blackeye No. 50 Cowpea’. Journal of Plant Registrations 3:236–240. DOI: 10.3198/jpr2009.01.0039crc. Abstract. Full PDF


Flowers TJ, Gaur PM, Laxmipathi Gowda CL, Krishnamurthy L,  Samineni S, Siddique KHM, Turner NC, Vadez V, Varshney RK, Colmer TD (2009). Salt sensitivity in chickpea. Plant, Cell and Environment (online). DOI: 10.1111/j.1365-3040.2009.02051.x. PDF

Foncéka D, Hodo-Abalo T, Rivallan R, Faye I, Ndoye Sall M, Ndoye O, Fávero AP, Bertioli DJ, Glaszmann JC, Courtois B and Rami J-F (2009).  Genetic mapping of wild introgressions into cultivated peanut: a way toward enlarging the genetic basis of a recent allotetraploid. BMC Plant Biology 2009, 9:103. DOI:10.1186/1471-2229-9-103. PDF

Galeano CH, Gomez M, Rodriguez LM, Blair MW (2009) CEL I nuclease for SNP discovery and marker development in common bean (Phaseolus vulgaris L.)  Crop Science 49:381-394. PDF

Ghislain M, Núñez J, Herrera MR, Pignataro J, Guzman F, Bonierbale M, Spooner DM (2009). Robust and highly informative microsatellite-based genetic identity kit for potato. Molecular Breeding (in press).

Ghislain M, Núñez J, Herrera MR, Spooner DM (2009). The single Andigenum origin of Neo-Tuberosum potato materials is not supported by microsatellite and plastid marker analyses. Theoretical Applied Genetics (in press).

Heuer S, Lu X, Chin JH, Tanaka JP, Kanamori H, Matsumoto T, De Leon T, Ulat VJ, Ismail AM, Yano M and Wissuwa M. (2009). Comparative sequence analyses of the major QTL Phosphate uptake 1 (Pup1) reveal a complex genetic structure. Plant Biotechnology Journal. In press.

Hervé P and Serraj R (2009). Gene technology and drought: a simple solution for a complex trait? Afr. J. Biotech. 8 (9):1740–1749.

Hoffmann B, Aranyi N and Molnár-Láng M (2009). Possibilities to increase stress tolerance of wheat. Cereal Res. Commun. 37. Supplement 2: 93-96. DOI: 10.1556/297 CRC.37.2009.Suppl.2. 

Hong He, Serraj R, Yang Q. (2009). Changes in OsXTH gene expression, ABA content, and peduncle elongation in rice subjected to drought at the reproductive stage. Acta Physiol. Plant. 31(4):749-756.

Hund A, Ruta N and Liedgens M (2009). Rooting depth and water use efficiency of tropical maize inbred lines, differing in drought tolerance. Plant Soil 318:311–325. DOI: 10.1007/s11104-008-9843-6. Abstract

Jayashree B, BhanuPrakash A, Anusha J, Srinivasa Reddy P, Nayak S, Varshney RK  (2009). Perl module and PISE wrappers for the integrated analysis of sequence data and SNP features. BMC Research Notes 2:92. PDF

Leal-Bertioli SCM, Jose ACVF, Alves-Freitas DMT, Moretzsohn MC, Guimaraes PM, Nielen S, Vidigal BS, Pereira RW, Pike J, Favero AP, Parniske M, Varshney RK, Bertioli DJ (2009). Identification of candidate genome regions controlling disease resistance in Arachis. BMC Plant Biology  9: 112.

Kassahun B, Bidinger FR, Hash CT and Kuruvinashetti MS (2009). Stay-green expression in early generation sorghum [Sorghum bicolor (L.) Moench] QTL introgression lines. Euphytica (accepted).

Khazaei H, Shahram-D Mohammady, Zaharieva M, Monneveux P (2009). Carbon isotope discrimination and water use efficiency in Iranian diploid, tetraploid and hexaploid wheats grown under well-watered conditions. Genetic Resources and Crop Evolution 56:105-114 (available on-line) DOI: 10.1007/s10722-008-9349-3.

Krishnan A, Guiderdoni E, An G, Hsing YI, Han CD, Lee MC, Yu SM, Upadhyaya N, Ramachandran S, Zhang Q, Sundaresan V, Hirochika H, Leung H and Pereira A (2009). Mutant resources in rice for functional genomics of the grasses. Plant Physiology 149: 165-70.

López-Marín HD, Rao IM, Blair MW  (2009). Quantitative trait loci for aluminum resistance in common bean (Phaseolus vulgaris L.) Theoretical Applied Genetics 119:449–458. PDF

Manosalva P, Davidson R, Liu B, Xhu X, Hulbert S, Leung H, Leach JE (2009). A germin-like protein gene family functions as a complex QTL conferring broad-spectrum disease resistance in rice. Plant Physiology 149:1-11. Abstract

McNally KL,  Childs KL, Bohnert Regina, Davidsond Rebecca M, Zhaoe Keyan, Ulata Victor J, Zellerc Georg, Clark Richard M, Hoeng DR, Bureaug TE, Stokowskih R, Ballingerh DG, Frazerh KA, Coxh DR, Padhukasahasrame B, Bustamantee CD, Weigelf D, Mackill DJ, Bruskiewich RM, Ratschc G, Buell CR, Leung H and Leach JE (2009). Genomewide SNP variation reveals relationship reveals relationships among landraces and modern varieties of rice. Proceedings of the National Academy of Sciences of the United States of America (PNAS). Available online. DOI: 10.1073/pnas.0900992106. PDF

Muchero W, Diop NN, Bhat PR, Fenton RD, Wanamaker S, Pottorff M, Hearne S, Cisse N, Fatokun C, Ehlers JD, Roberts PA and Close TJ (2009). A consensus genetic map of cowpea [Vigna unguiculata (L) Walp.] and synteny based on EST-derived SNPs. Proceedings of the National Academy of Sciences (online). DOI: 10.1073/pnas.0905886106. PDF

Muchero W, Ehlers JD, Close TC and Roberts PA (2009). Mapping QTL for drought stress-induced premature senescence and maturity in cowpea [Vigna unguiculata (L.) Walp.] Theoretical and Applied Genetics ([Epub ahead of print]. Abstract DOI 10.1007/s00122-008-0944-7.

Nayak SN, Balaji J, Upadhyaya HD, Hash CT, Kavi Kishor PB, Chattopadhyay D, Rodriquez LM, Blair MW, Baum M, McNally K, This D, Hoisington DA, Varshney RK (2009). Isolation and sequence analysis of DREB2A homologues in three cereal and two legume species. Plant Science 177:460–467. Article. 

Orjuela J, Garavito A, Bouniol M, Arbelaez JD, Moreno L, Kimball J, Wilson G, Rami J-F, Tohme J, McCouch SR and Lorieux M (2009).  
A universal core genetic map for rice. Theoretical and Applied Genetics (online). DOI: 10.1007/s00122-009-1176-1. Abstract

Parent B, Conejero G, Tardieu F (2009). Spatial and temporal analysis of non-steady elongation of rice leaves. Plant Cell Environment 32: 1561-1572. DOI: 10.1111/j.1365-3040.2009.02020.x. Abstract

Poland J, Balint-Kurti PJ, Wisser RJ, Pratt R and Nelson RJ (2009). Shades of gray: The world of quantitative disease resistance. Trends in Plant Science 14(1):21-9. (Available on line since11 Dec. 2008). Abstract

Ramu P, Kassahun B, Senthilvel S, Ashok Kumar C, Jayashree B, Folkertsma RT, Ananda Reddy L, Kuruvinashetti MS, Haussmann BIG and Hash CT (2009). Exploiting rice-sorghum synteny for targeted development of EST-SSRs to enrich the sorghum genetic linkage map. Theoretical and Applied Genetics (accepted). DOI 10.1007/s00122-009-1120-4.

Ratnakumar P, Vadez V, Nigam SN and Krishnamurthy L (2009). Assessment of transpiration efficiency in peanut (Arachis hypogaea L.) under drought by lysimetric system. Plant Biology (In press).

Risterucci A-M, Hippolyte I, Perrier X, Xia L, Caig V, Evers M, Huttner E, Kilian A, Glaszmann JC (2009). Development and assessment of Diversity Arrays Technology for high-throughput DNA analyses in Musa. Theoretical Applied Genetics (online). DOI 10.1007/s00122-009-1111-5. PDF

Ruta N Liedgens M Fracheboud Y Stamp Y Hund A (2009) QTLs for the elongation of axile and lateral roots of maize in response to low water potential (2009). Theoretical and Applied Genetics (online). DOI 10.1007/s00122-009-1180-5. Abstract

Salekdeh GH, Reynolds M, Bennett J and Boyer J (2009). Conceptual framework for drought  phenotyping during molecular breeding. Trends in Plant Science 14 (9):488-496. DOI:10.1016/j.tplants.2009.07.007.  PDF

Saxena RK, Saxena KB, Kumar RV, Hoisington DA, Varshney RK (2009). SSR-based diversity in elite pigeonpea genotypes for developing mapping populations to map resistance to Fusarium wilt and sterility mosaic disease. Plant Breeding (in press).

Sepsi A, Molnár I and Molnár-Láng M (2009). Physical mapping of a 7A.7D translocation in the wheat–Thinopyrum ponticum partial amphiploid BE-1 using multicolour genomic in situ hybridization and microsatellite marker analysis. Genome 52:748–754. (doi:10.1139/G09-047) IF 1.71.

Sepsi A and Bucsi J (2009). Physical mapping of the 7D chromosome using a wheat/barley translocation line (5HS.7DL) produced in Martonvásári wheat background using microsatellite markers. Cereal Res. Commun. 37. Supplement 2:297-300. DOI: 10.1556/297 CRC.37.2009.Suppl.2.

Serraj R, Kumar A, McNally KL, Slamet-Loedin I, Bruskiewich R, Mauleon R, Cairns J and Hijmans RJ (2009). Improvement of drought resistance in rice. Adv. Agron.103: 41-98.

Soós V, Sebestyén E, Juhász A, Pintér J, Light ME, Van Staden J, Balázs E (2009). Stress-related genes define essential steps in the response of maize seedlings to smoke-water. Functional and Integrative Genomics (DOI:10.1007/s10142-008-0105-8) (accepted for publication).

Soós V, Sebestyén E, Juhász A, Light ME, Van Staden J, Balázs E (2009). Smoke-water induced changes of expression pattern in Grand Rapids lettuce achenes. Seed Science Research. (DOI:10.1017/s0960258508187815)

Thachuk C, Crossa J, Franco J, Dreisigacker S, Warburton Mand Davenport GF (2009). Core Hunter: an algorithm for sampling genetic resources based on multiple genetic measures. BMC Bioinformatics 10:243. DOI: 10.1186/1471-2105-10-243. Abstract  PDF

Torabi S, Wissuwa M, Heidari M, Naghavi MR, Gilany K, Hajirezaei MR, Omidi M, Yazdi-Samadi B, Ismail AM and Salekdeh GH (2009).  A comparative proteome approach to decipher the mechanism of rice adaptation to phosphorous deficiency. Proteomics 9:159-170. (DOI 10.1002/pmic.200800350). PDF

Trachsel S, Messmer R, Stamp P Hund A (2009). Mapping of QTLs for lateral and axile root growth of tropical maize. Theoretical and Applied Genetics 119 (8):1413–1424. DOI:10.1007/s00122-009-1144-9. Abstract

Varshney RK, Bertioli DJ,  Moretzsohn MC, Vadez V, Krishnamurthy L,Aruna  R, Nigam SN, Moss BJ, Seetha K, Ravi K,  He G, Knapp SJ, Hoisington DA (2008). The first SSR-based genetic linkage map for cultivated groundnut (Arachis hypogaea L.). Theoretical and Applied Genetics 118: 729-739 (DOI: 10.1007/s00122-008-0933-x).  PDF

Varshney RK, Close TJ, Singh NK, Hoisington DA and Cook DR (2009). Orphan legume crops enter the genomics era! Current Opinion in Plant Biology 12: 202–210 (DOI: 10.1016/j.pbi.2008.12.004). PDF

Varshney RK and Dubey A (2009). Novel genomic tools and modern genetic and breeding approaches for crop improvement.  J. Plant Biochem Biotechnol 18: 127-138.

Varshney RK, Hiremath PJ, Lekha P, Kashiwagi J, Balaji J, Deokar AA, Vadez V, Xiao Y, Srinivasan R, Gaur PM, Siddique KHM, Town CD and Hoisington DA (2009). A comprehensive resource of drought- and salinityresponsive ESTs for gene discovery and marker development in chickpea (Cicer arietinum L.). BMC Genomics: 10:523 (DOI:10.1186/1471-2164-10-523). PDF


Varshney RK, Mahendar T, Aruna R, Nigam SN, Neelima K, Vadez V and Hoisington DA (2009). High level of natural genetic variation in a groundnut (Arachis hypogaea L.) germplasm collection assayed by selected informative SSR markers. Plant Breeding (in press).

Varshney RK, Nayak SN, May GD and Jackson SA (2009). Next-generation sequencing technologies and their implications for crop genetics and breeding. Trends in Biotechnology 27(9): 552-530. Abstract

Varshney RK, Pande S, Kannan S, Sharma M, Gaur PM, Narayana Rao and Hoisington DA. (2009). Assessment and comparison of AFLP and SSR based molecular genetic diversity in Indian isolates of Ascochyta rabiei, a causal agent of ascochyta blight in chickpea (Cicer aeritinum L.). Mycological Progress (in press).

Chenu K, Chapman SC, Hammer GL, McLean G, Salah HBH and Tardieu F (2008). Short-term responses of leaf growth rate to water deficit scale up to whole-plant and crop levels: an integrated modelling approach in maize. Plant, Cell and Environment 31:378–391.
(DOI: 10.1111/j.1365-3040.2007.01772.x). PDF


Collard BCY, Vera Cruz CM, McNally KL, Virk PS and Mackill DJ (2008). Rice molecular breeding laboratories in the genomics era: current status and future considerations. International Journal of Plant Genomics Vol 2008, Article ID 524847, 25 pp (DOI: 10.1155/2008/524847). Abstract

Collins NC, Tardieu F and Tuberosa R (2008). Quantitative trait loci and crop performance under abiotic stress: Where do we stand? Plant Physiology 147:469–486. Abstract

Conte M, Gaillard S, Droc G and Perin C (2008). Phylogenomics of plant genomes: A methodology for genome-wide searches for orthologs in plants. BMC Genomics, 9:183 (DOI: 10.1186/1471-2164-9-183). Article  

Conte M, Gaillard S, Lanau N, Rouard M and Périn C (2008). GreenPhylDB: a database for plant comparative genomics. Nucleic acids research, 36:D991-D998 (DOI: 10.1093/nar/gkm934). Abstract 

2007

Balint-Kurti PJ, Zwonitzer JC, Wisser RJ, Carson ML, Oropeza-Rosas M, Holland JB and Szalma SJ (2007). Precise mapping of quantitative trait loci for resistance to southern leaf blight, caused by Cochliobolus heterostrophus race O, and flowering time using advanced intercross maize lines. Genetics 176:645–657.

Barrera-Figueroa BE, Pena-Castro J, Acosta-Gallegos JA, Ruiz-Medrano R and Xoconostle-Cazares B (2007). Isolation of dehydration-responsive genes in a drought tolerant common bean cultivar and expression of a group 3 late embryogenesis abundant mRNA in tolerant and susceptible bean cultivars. Functional Plant Biology 34:368-381. Abstract

Bernier J, Kumar A, Ramaiah V, Spaner D and Atlin G (2007). A large-effect QTL for grain yield under reproductive-stage drought stress in upland rice. Crop Science 47:505–516.  PDF


Bhatnagar-Mathur P, Devi MJ, Reddy DS, Lavanya M, Vadez V, Serraj R, Yamaguchi-Shinozaki K and Sharma KK (2007). Stress-inducible expression of At DREB1A in transgenic peanut (Arachis hypogaea L) increases transpiration efficiency under water-limiting conditions. Plant Cell Reports 26:2071–2082 (DOI: 10.1007/s00299-007-0406-8).


Blair MW, Díaz JM, Hidalgo R , Díaz LM, Duque MC  (2007) Microsatellite characterization of Andean races of common bean (Phaseolus vulgaris L.). Theoretical Applied Genetics 116: 29-43.

Blair MW, Rodriguez LM, Pedraza F, Morales F, Beebe SE. (2007) Genetic mapping of the bean golden yellow mosaic geminivirus resistance gene bgm-1 and linkage with potyvirus resistance in common bean (Phaseolus vulgaris L.). Theoretical Applied Genetics 114: 261-271.

Caniato FF, Guimarães CT, Schaffert RE, Alves VMC, Kochian LV, Borém A, Klein PE and Magalhães JV (2007).Genetic diversity for aluminum tolerance in sorghum. Theoretical and Applied Genetics 114:863–876 (DOI: 10.1007/s00122-006-0485-x).  PDF


Chapman SC (2007). Use of crop models to understand genotype by environment interactions for drought in real-world and simulated plant breeding trials. Euphytica  (DOI: 10.1007/s10681-007-9623-z). PDF


Chen X, Laudeman TW, Rushton PJ, Spraggins TA and Timko MP (2007). CGKB: an annotation knowledge base for cowpea (Vigna unguiculata L) methylation filtered genomic genespace sequences. BMC Bioinformatics 8:129 (DOI: 10.1186/1471-2105-8-129). PDF


Diaz G, Ryba M, Nelson R, Leung H and Leach J (2007). Detection of deletion mutants in rice via overgo hybridization onto membrane spotted arrays. Plant Molecular Biology Reporter 25:17–26 (DOI: 10.1007/s11105-007-0002-7).


Dingkuhn M, Kouressy M, Vaksmann M, Clerget B, Chantereau J (2007). A model of sorghum photoperiodism using the concept of threshold-lowering during prolonged appetence. European Journal of Agronomy (in press).

Dwivedi SL, Crouch JH, Mackill DJ, Xu Y, Blair MW, Ragot M, Upadhyaya, HD, Ortiz R (2007). The molecularization of public sector crop breeding: progress, problems and prospects. Advances in Agronomy 95:163–318.


Dwivedi SL, Upadhyaya HD, Stalker HT, Blair MW, Bertioli D, Nielen S, Ortiz R (2007) Enhancing crop gene pools of cereals and legumes with beneficial traits using wild relatives (2007).  Plant Breeding Reviews 30: 179-230.

Fang J, Chao CCT, Roberts PA and Ehlers JD (2007). Genetic diversity of cowpea (Vigna unguiculata (L) Walp) in four West African and USA breeding programs as determined by AFLP analysis. Genetic Resources and Crop Evolution 54:1197–1209.

Hafsi M, Akhter J, Monneveux P (2007). Leaf senescence and carbon isotope discrimination in durum wheat (Triticum durum Desf.) under severe drought conditions. Cereal Research Communications 35: 71-80.

Heinemann A, Dingkuhn M, Luquet M, Combres JC and Chapman SC (2007). Characterization of drought stress environments for upland rice and maize in central Brazil. Euphytica. (DOI 10.1007/s10681-007-9579-z ). PDF


Heslop-Harrison JS and Schwarzacher T (2007). Domestication, genomics and the future for banana. Annuals of Botany 100(5):1073–1084.

Hribova E, Dolezelova M, Town CD, Macas J,  and Dolezel J (2007). Isolation and characterization of the highly repeated fraction of the banana genome. Cytogenetic and Genome Research 268-274 (DOI: 10.1159/000112073)  Abstract

Hurtado P, Olsen KM, Buitrago C, Ospina C, Marin J, Duque M, de Vicente C, Wongtiem P, Wenzel P, Killian A, Adeleke M and Fregene M (2007). Comparison of Simple Sequence Repeat (SSR) and Diversity Array Technology (DArT) Markers for Assessing Genetic Diversity in Cassava (Manihot esculenta Crantz) Plant Genetic Resources (Accepted October 2007, in Press).

Ismail AM, Heuer S, Thomson MJ and Wissuwa M (2007). Genetic and genomic approaches to develop rice germplasm for problem soils. Plant Molecular Biology 65:547–570. PDF


Jansen J and van Hintum T (2007). Genetic distance sampling - a novel sampling method for obtaining core collections using genetic distances with an application to cultivated lettuce. Theoretical and Applied Genetics 114:421–428

Jayashree B, Hanspal MS, Srinivasan R, Vigneshwaran R, Varshney RK, Naya S, Eshwar K, Ramesh N, Chandra S and Hoisington DA (2007). An integrated pipeline of open source software adapted for multi-CPU architectures: use in the large-scale identification of single nucleotide polymorphisms. Comparative and Functional Genomics 2007, Article ID 35604 7 pp (DOI: 10.1155/2007/35604).

Ji XM, Van den Ende W, Schroeven L, Clerens S, Geuten K, Cheng SH and Bennett J (2007). The rice genome encodes two vacuolar invertases with fructan exohydrolase activity but lacks the related fructan biosynthesis genes of the Pooideae. New Phytologist 173:50–62.

Karaba A, Dixit S, Greco R, Aharoni A, Trijatmiko KR, Marsch-Martinez N, Krishnan A, Nataraja KN, Udayakumar M and Pereira A (2007). Improvement of water use efficiency in rice by expression of HARDY, an Arabidopsis drought and salt tolerance gene. Proceedings of the National Academy of Sciences of the USA 104:15270–15275.

Kobayasi Y, Hoekenga OA, Ito H, Nakashima M, Saito S, Shaff JE , Maron LG, Piñeros MA, Kochian LV, Koyama H. 2007. Characterization of AtALMT1 expression in aluminum inducible malate release and its role for rhizotoxic stress tolerance in Arabidopsis thaliana.  Plant Physiol 145: 843-852.

Kottapalli KR, Kottapalli P, Agrawal GK, Kikuchi S and Rakwal R (2007). Recessive bacterial leaf blight resistance in rice: complexity, challenges and strategy. Biochemical and Biophysical Research Communications 355:295–301.

Kottapalli KR, Rakwal R, Satoh K, Shibato J, Kottapalli P, Iwahashi H and Kikuchi S (2007). Transcriptional profiling of indica rice cultivar IET8585 (Ajaya) infected with bacterial leaf blight pathogen Xanthomonas oryzae pv oryzae. Plant Physiology and Biochemistry 45:729–866.

Kouressy M, Dingkuhn M, Vaksmann M, Heinemann AB (2007). Adaptation to diverse semi-arid environments of sorghum genotypes having different plant type and sensitivity to photoperiod. In press in Agricultural and Forest Meteorology.

Krishnamurthy L, Vadez V, Devi JM, Serraj R, Nigam SN, Sheshshayee MS, Chandra S, and Aruna R (2007). Variation in transpiration efficiency and its related traits in a groundnut (Arachis hypogaea L.) mapping population. Field Crops Research 103: 189-197.

Leung, Hei (2007). Stressed genomics —bringing relief to rice fields. Current Opinion in Plant Biology 2007, 11:1–8 - PDF

Li G, Liu Y, Ehlers JD, Zhu Z, Wu X, Wang B and Lu Z (2007). Identification of an AFLP fragment linked to rust resistance in asparagus bean and its conversion to a SCAR marker. Horticultural Science 42:1153–1156.

Mace ES, Varshney RK, Mahalakshmi V, Seetha K, Gafoor A, Leeladevi Y and Crouch JH (2007). In silico development of simple sequence repeat markers within the aeschynomenoid/dalbergoid and genistoid clades of the Leguminosae family and their transferability to Arachis hypogaea, groundnut. Plant Science 174:51–60.

Magalhães JV, Liu J, Guimarães CT, Lana UGP, Alves VMC, Wang YH, Schaffert RE, Hoekenga OA, Piñeros MA, Shaff JE, Klein PE, Carneiro NP, Coelho CM, Trick HN and Kochian LV. A gene in the multidrug and toxic compound extrusion (MATE) family confers aluminum tolerance in sorghum. Nature Genetics 39(9):1156–1161. PDF

Molnár I, Linc G, Dulai SD Nagy E and Molnár-Láng M (2007). Ability of chromosome 4H to compensate for 4D in response to drought stress in a newly developed and identified wheat-barley 4H(4D) disomic substitution line. Plant Breeding 126:369-374. Abstract

Monneveux P, Sheshshayee MS, Akhter J, Ribaut J-M (2007). Using carbon isotope discrimination to select maize (Zea mays L.) inbred lines and hybrids for drought tolerance. Plant Science 173:390-396.

Okogbenin E, Porto MCM, Egesi C, Mba C, Espinosa E, Santos LG, Ospina C, Marín J, Barrera E, Gutiérrez J, Ekanayake I, Iglesias C and Fregene MA (2007). Marker-assisted introgression of resistance to cassava mosaic disease into Latin American germplasm for the genetic improvement of cassava in Africa. Crop Science 47:1895–1904. PDF

Park SH, Kim CM, Je BI, Park SH, Park SJ, Piao HL, Xuan YH, Choe MS, Satoh K, Kikuchi S, Lee KH, Cha YS, Ahn BO, Ji HS, Yun DW, Lee MC, Suh SC, Eun MY and Han CD (2007). A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts, in rice. Planta 227:1–12 (DOI: 10.1007/s00425-007-0576-1).

Raghavan C, Naredo E, Wang H, Atienza G, Liu B, McNally KL and Leung H (2007). Rapid method for detecting SNPs on agarose gels and applications for candidate gene mapping. Molecular Breeding 19:87–101. PDF


Rahman S, Seraj S and Blumwald E (2007). Bacteriophage lambda genomic library construction of Oryza sativa L var Pokkali. Plant Tissue Culture and Biotechnology 17(2):149–159. PDF


Ribaut J-M and Ragot M (2007). Marker assisted selection to improve drought adaptation in maize: the backcross approach, perspectives, limitations, and alternatives. Journal of Experimental Botany 58(2) 351–360 (DOI: 10.1093/jxb/erl214).

Ribaut J-M, Fracheboud Y, Monneveux P, Bänziger M, Vargas M, Jiang C (2007). Quantitative trait loci for yield and correlated traits under high and low soil nitrogen conditions in tropical maize. Molecular Breeding 20:15-29.

Sadok W, Naudin Ph, Boussuge B, Muller B, Welcker C and Tardieu F (2007). Leaf growth rate per unit thermal time follows QTL-dependent daily patterns in hundreds of maize lines under naturally fluctuating conditions. Plant, Cell and Environment 30:135–146.

Saidi M, Ngouajio M, Itulya FM and Ehlers JD (2007). Leaf harvesting initiation time and frequency affect biomass partitioning and yield of cowpea (Vigna unguiculata (L) Walp). Crop Science 47:1159–1166.

Salam MA, Rahman MA, Bhuiyan MAR, Uddin K , Sarker MRA, Yasmeen  R and Rahman MS (2007). BRRI dhan47: a salt tolerant variety for Boro season, IRRN, IRRI, Philippines. PDF

Satoh K, Doi K, Nagata T, Kishimoto N, Suzuki K et al (2007) Gene organization in rice revealed by full-length cDNA mapping and gene expression analysis through microarray. PLoS ONE 2(11): e1235 (DOI: 10.1371/journal.pone.0001235.  PDF


Spooner DM, Nuñez J, Trujillo G, del Rosario Herrera M, Guzmán F and Ghislain M (2007). Extensive simple sequence repeat genotyping of potato landraces supports a major reevaluation of their gene pool structure and classification. Proceedings of the National Academy of Sciences of the United States of America 104(49):19398–19403. PDF

Szakács É., Molnár-Láng M (2007). Development and molecular cytogenetic identification of new winter wheat/winter barley (Martonvásári 9 kr1/Igri) disomic addition lines. Genome 50: 43-50.  Abstract


Vadez V, Krishnamurthy L, Gaur PM, Upadhyaya HD, Hoisington DA, Varshney RK, Turner NC and Siddique KHM (2007). Large variation in salinity tolerance is explained by differences in the sensitivity of reproductive stages in chickpea. Field Crop Research 104:123–129.

Vadez V, Krishnamurthy L, Kashiwagi JW, Kholova J, Devi JM, Sharma KK, Bhatnagar-Mathur P, Hoisington DA, Hash CT, Bidinger FR, and Keatinge JDH (2007). Exploiting the functionality of root systems for dry, saline, and nutrient deficient environments in a changing climate. J. SAT Agric Res Volume 4 (Special Symposium edition) PDF

Vadez V, Rao S, Sharma KK, Bhatnagar Mathur and Devi JM. (2007). DREB1A allows for more water uptake in groundnut by a large modification in the root/shoot ratio under water deficit. International Arachis Newsletter, 27: 27-31.

van Hintum, T  (2007). Data resolution: a jackknife procedure for determining the consistency of molecular marker datasets. Theoretical and Applied Genetics 115:(3)343–349.

Varshney RK, Horres R, Molina C, Nayak S, Jungmann R, Swamy P, Winter P, Jayashree B, Kahl G and Hoisington DA (2007). Extending the repertoire of microsatellite markers for genetic linkage mapping and germplasm screening in chickpea. Journal of Semi-Arid Tropical Agricultural Research 5: 3 pp. PDF


Varshney RK, Nayak S, Jayashree B, Eshwar K, Upadhyaya HD and Hoisington DA (2007). Development of cost-effecive SNP assays for chickpea genome analysis and breeding. Journal of Semi-Arid Tropical Agricultural Research, in press.

Wanchana S, Thongjuea S, Ulat VJ, Anacleto M, Mauleon R, Conte M, Rouard M, Ruiz M, Krishnamurthy N, Sjolander K, van Hintum T and Bruskiewich RM (2007) The Generation Challenge Programme comparative plant stress-responsive gene catalogue. Nucleic Acids Research 2007:1–4 (DOI: 10.1093/nar/gkm798)
Abstract  Full version

Wang J, Chapman SC, Bonnett DG, Rebetzke GJ and Crouch J (2007). Application of population genetic theory and simulation models to efficiently pyramid multiple genes via marker-assisted selection. Crop Science 47(2):582–588. PDF


Welcker C, Boussuge B, Benciveni C, Ribaut J-M and Tardieu F 2007. Are source and sinks strengths genetically linked in maize plants subjected to water deficit? A QTL study of the responses of leaf growth and Anthesis-Silking Interval to water deficit. Journal of Experimental Botany 58(2):339–349.

Xie, C. Warburton, M, Li M, Li X, Xiao M, Hao Z, Zhao O and Zhang S (2007). An analysis of population structure and linkage disequilibrium using multilocus data in 187 maize inbred lines. Molecular Breeding (DOI: 10.1007/s11032-007-9140-8).

Xu Y, Skinner DJ, Wu H, Palacios-Rojas N, Araus JL, Yan J, Gao S, Warburton ML, and Crouch JH (2007). Advances in maize genomics and their value for enhancing gains from molecular breeding. International Journal of Plant Genomics (In Press).

Xu X, Yuan H, Li SH, Monneveux P (2007). Relationship between carbon isotope discrimination and grain yield in spring wheat cultivated under different water regimes. Journal of Integrative Plant Biology 49:1497–1507.

Xu X, Yuan H, Li SH, Monneveux P (2007). Relationship between carbon isotope discrimination and grain yield in spring wheat under different water regimes and under saline conditions in the Ningxia Province (North-west China). Journal of Agronomy and Crop Science, 193, 422–434.

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2008
Alves AAC, Dita MA, Farias ARN, Silva AF, Bellotti A and Fregene M (2008). Pré-melhoramento de mandioca: Utilização de espécies silvestres de Manihot como fonte de resistência a estresses bióticos e abióticos. In: Anais, II Simpósio Brasileiro de Recursos Genéticos, 25-28 Novembro 2008, Brasília, Brazil. Embrapa Recursos Genéticos e Biotecnologia (Cenargen), Brasília-DF, Brazil, 78 pp. PDF

2007
Alves AAC, Dita MA, Silva AF, Fregene MA, Duque LO and Setter TL (2007). Evaluation of drought tolerance contrasting cassava varieties under semi-arid environment. In: 2007 Poster abstracts. Generation Challenge Programme, Mexico DF, Mexico, 66 pp. PDF

Alves AAC, Farias ARN, Dita MA, Silva AF, Bellotti AC and Fregene MA (2007). Evaluation of cassava interspecific hybrids for resistance to pests and diseases in different environments of Brazil. In: 2007 Poster abstracts. Generation Challenge Programme, Mexico DF, Mexico, 67 pp.  PDF

Alves A, Fregene M, Ferguson M, Setter T, Ceballos H, Mkamilo G, Kanju E, Osei C, Souza A, Dita M and Silva A (2007). Identifying the physiological and genetic traits that make cassava one of the most drought tolerant crops. In: 2007 Project mid-year and final reports: Competitive and commissioned projects. Generation Challenge Programme, Mexico DF, Mexico, pp 47–49.
Report
Full proceedings

Alves AAC, Silva AF, Queiroz DC and Dita MA (2007). Avaliação de variedades de mandioca para tolerância à seca, em condições semi-áridas do Brasil (Evaluation of cassava varieties for drought tolerance under semi-arid condition in Brazil). Revista Raízes e Amidos Tropicais, Volume 3, Anais do XII Congresso Brasileiro da Mandioca, 23–26 October 2007, Paranavaí, Brazil, Botucatu: CERAT-UNESP (CD), 5 pp.  PDF


Bakry F, Baurens FC, Dolezel J, Heslop-Harrison JS, Hippolyte I, Matsumoto T, Miller RG, Rouard M, Roux N, Sidibe-Bocs S, Souza M and Sasaki T (2007). Targeted Musa genome sequencing and frame map construction. In: 2007 Project mid-year and final reports: competitive and commissioned projects. Generation Challenge Programme, Mexico DF, Mexico, pp 115–117.
Full proceedings

Bellotti A, Fregene M, Alves A, Okogbenin E, Okai E and Kawuki R (2007). Development of low-cost technologies for pyramiding useful genes from wild relatives of cassava into elite progenitors. In: 2007 Project mid-year and final reports: competitive and commissioned projects. Generation Challenge Programme, Mexico DF, Mexico, pp 55–57.
Report
Full proceedings

Dita MA and Alves AA (2007). Incidência e severidade de doenças em espécies silvestres de mandioca (Incidence and severity of diseases in cassava wild species). In: Fitopatologia Brasileira Volume 32 Suplemento (XL Annual Meeting of the Brazilian Phytopathological Society), p S148. PDF


Dita MA, Jesus J, de Silva AF, Bellotti A, Fregene M and Alves AAC (2007). Avaliação de híbridos interespecíficos de mandioca para a resistência a doenças (Evaluation of cassava interspecific hybrids for diseases resistance). Revista Raízes e Amidos Tropicais, Volume 3, Anais do XII Congresso Brasileiro da Mandioca, 23–26 October 2007, Paranavaí, Brazil, Botucatu: CERAT-UNESP (CD), 4 pp. PDF


Farias ARN, Bellotti AC, Fregene M, Silva AF and Alves AAC (2007). Avaliação de híbridos interespecíficos de mandioca para resistência a artrópodes-praga em condições semi-áridas (Evaluation of cassava interspecific hybrids for pests resistance in semi-arid conditions). Revista Raízes e Amidos Tropicais, Volume 3, Anais do XII Congresso Brasileiro da Mandioca, 23–26 October, 2007, Paranavaí, Brazil, Botucatu: CERAT-UNESP (CD), 4 pp. PDF


Generation Challenge Programme (2007). 2007 Project mid-year and final reports: competitive and commissioned projects. Proceedings of Generation Challenge Programme Annual Research Meeting, Benoni, South Africa, 12–16 September 2007. Generation Challenge Programme, Mexico DF, Mexico, 190 pp.  PDF


Hippolyte I, Bakry F, Carreel F, Jenny C, Arnaud E, Roux N, Glaszmann, JC, Risterucci AM, Garsmeur O, D’Hont A and Baurens FC (2007). Progress of Musa (banana and plantain) genetic diversity and genome analysis at Agropolis-CIRAD. Proceedings of Plant and Animal Genome XV Conference, 13–17 January 2007, San Diego, California, USA, Abstract no W35, p 13.  PDF


Hoekenga OE, Magalhaes JV and Kochian LV (2007). Joint linkage-association analysis of aluminum tolerance in maize. Proceedings of Plant and Animal Genome XV Conference, 13–17 January 2007, San Diego, California, USA, Abstract no W4, p 6.  PDF


Hunter E, Risterucci AM, Hippolyte I, Caig V, Carling J, Evers M, Uszynski G, Wenzl P, Glaszmann, JC and Kilian A (2007). Establishment of diversity arrays technology for whole-genome profiling of banana. Paper presented at Plant and Animal Genome XV Conference, 13–17 January 2007, San Diego, California, USA, Abstract no W34, p 13.  PDF

Islam MR, Gregorio GB, Salam MA, Collard BCY, Singh RK and Hassan L (2007). Validation of molecular markers and haplotype diversity at the SalTol locus on chromosome 1 of rice. In: Abstracts, 2nd International Conference on Plant molecular Breeding held on March 23-27, 2007, Sanya, Hainan, P.R. China.

Islam MR, Gregorio GB, Collard BCY,  Tumimbang-Raiz E, Adorada DL,  Mendoza RD, Salam MA and Hassan L (2007). Application of molecular markers to rice breeding population and haplotype diversity for salinity tolerance in chromosome 1. In: Abstracts, Conference on Promotion of Biotechnology in Bangladesh: National and International perspectives. Held on April 6-8, 2007, Dhaka, Bangladesh. p 40.

Islam MR, Salam MA, Hassan L, Collard BCY, Singh RK and Gregorio GB (2007). QTL mapping of rice for salinity tolerance at seedling stage. In: Abstracts, 7th Biennial conference of Plant Breeding and Genetics Society of Bangladesh (PBGSB), held on May 26, 2007, Gazipur, Bangladesh. p 55.

Ismail AM, Gatdula KA, Heuer S, Lu X and Wissuwa M. 2006. Phosphorus deficiency tolerance in rice: genetic and molecular bases and implications for breeding. 3rd International Symposium on Phosphorus dynamics in the Soil-Plant Continuum, 14-19 May 2006. Uberlândia, Minas Gerais, Brazil, Pp. 121-122.

Ismail AM, Wissuwa M, Gregorio G, Thomson M, Singh RK, Heuer S and Mackill DJ. 2006. Salinity, submergence and nutrient deficiency in rice: bases of tolerance and progress through breeding. Proc. 2st International Rice Congress, 9-13 October, 2006, New Delhi, India, pp 15.

Kikuchi S (2007). Transcriptome analysis of drought stress and other responses in rice using 60 mer-oligoarray system based on the full-length cDNA. Proceedings of Plant and Animal Genome XV Conference, 13–17 January 2007, San Diego, California, USA, Abstract no W74. PDF


Kochian LV, Magalhaes J, Liu J, Hoekenga O, Guimaraes C, Alves V, Maron L, Shaff J, Lyi M, and Schaffert R (2007) Elucidating the molecular determinants of aluminum tolerance in sorghum and maize. Proceedings of Plant and Animal Genome XV Conference, 13–17 January 2007, San Diego, California, USA, Abstract no W73.  PDF


Kochian LV and Magalhaes, JV (2007) Isolation and characterisation of aluminum tolerance genes in the cereals: an integrated functional genomic, molecular genetic and physiological analysis. In: 2007 Project mid-year and final reports: competitive and commissioned projects. Generation Challenge Programme, Mexico DF, Mexico, pp 42–46.  Full proceedings


Kumar A, Bernier J, Venuprasad R, Serraj R, Anitha R,Verulkar SB, Shashidhar HE, Hittalmani S, Mandal NP, Sinha PK, Dwivedi JL, Swain P, Singh ON, Bose L, Robin S, Chandrababu R, and Atlin G (2007). Breeding for drought tolerance: accomplishments and future strategies. Paper presented in the International symposium on Root biology and MAs strategies for drought resistance improvement in rice, 26-29 September 2007, UAS, Bangalore, India, pp.12-13.

Leach JE, Davidson R, Liu B, Manosalva P, Mauleon R, Carrillo G, Bruce M, Stephens J, Diaz MG, Nelson R, Vera Cruz C and Leung H. (2007). Understanding broad-spectrum, durable resistance in rice. In: Rice genetics V (Proceedings of the Fifth International Rice Genetics Symposium, 19–23 November 2005, International Rice Research Institute, The Philippines. Brar DS, Mackill D and Hardy B, eds). World Scientific Publishing Co, Singapore, pp 191–209.

Leung H, Mauleon R, Muthurajan R, Bernardo M, Choi I, Liu B, Leach J, Satoh K, Kikuchi S, Edward J and Galbraith D (2007). Integrating genetic and transcript maps for rice breeding. In: Proceedings of Plant and Animal Genome XV Conference, 13–17 January 2007, San Diego, California, USA, Abstract no W174.  PDF


Metz T, Mendoza MJ and Valerio R (2007). Open collaboration in an institutional context. Paper presented at the Web2ForDev: Participatory Web for Development Conference, 25–27 September 2007, Rome, Italy.  PDF

Molnár-Láng M, Szakács É, Linc G (2007). Identification of newly developed wheat/winter barley addition lines using fluorescence in situ hybridization and SSR markers. In: Proc. Pflanzenzüchtung und Genomanalyse, Vereinigung der Pflanzenzüchter und Saatgutkaufleute Österreichs, Druck, Verlag und HBLFA Raumberg - Gumpenstein, Irdning, 2006, 21-23 November, pp. 75-77. 

Molnár-Láng M, Szakács ÉD, Nagy E (2007). Development and molecular cytogenetic identification of new winter wheat/winter barley disomic addition lines. In: Wheat production in stressed environments. Developments in Plant Breeding (Buck HT, Nisi JE., Salomón N (eds). Springer, Dordrecht, The Netherlands, pp 707-713.

Molnár-Láng M, Szakács É, Linc G (2007). Development and molecular cytogenetic analysis of new wheat/winter barley addition lines. Plant Genetic Resoures and their Exploitation in the Plant Breeding for Food and Agriculture, Book of abstracts, 18th EUCARPIA Genetic Resources Section Meeting, Piestany (Slovak Republic) 23-26 May 2007, pp. 48-49. ISBN 978-80-88872-63-4.  PDF

Muranaka S and Fatokun C (2007). Identification of cowpea lines with resistance to 6 races of Striga gesnerioides in West Africa. Extra issue of Japanese Journal of Tropical Agriculture 51:73–74, Proceedings of 101st Japanese Tropical Agriculture Conference, 31 March–1 April 2007, Tokyo, Japan. (Ikehashi H, Inoue H, Iwahori S, Oka M, Kawashima K, Gemma H, Kikuchi M, Komaki H, Shinohara Y, Sugiyama N, Sumida H, Nagamine T, Nawata E, Nomura K, Maeda T, Hayashi Y, Vaughan DA, Matthews P and Roy K, eds).

Noronha ACS, Boaventura VJ and Alves AAC (2007). Aspectos biológicos de Mononychellus tanajoa (bondar) (Acari, Tetranychidae) em espécies silvestres de Manihot (Biological aspects of Mononychellus tanajoa (bondar) (Acari, Tetranychidae) in wild species of Manihot). Revista Raízes e Amidos Tropicais, v.3, Anais do XII Congresso Brasileiro da Mandioca, 23–26 October 2007, Paranavaí, Brazil, Botucatu: CERAT-UNESP (CD), 4 pp.  PDF


Omoigui LO, Kamara AY, Massawe FS, Ishiyaku MF, Menkir A and Muranaka S (2007). Evaluation of cowpea genotypes for their reactions to Striga gesnerioides in the dry savanna of northeastern Nigeria. Proceedings of African Crop Science Conference Volume 8, 27–31 October 2007, El-Minia, Egypt, (Ahmed KZ, Mahmoud MA, Salabi SI, El-Morsi EA and Ismael AM, eds), pp 273–278.

Sasaki T, Matsumoto T, Namiki N, Baurens FC, Souza M, Heslop-Harrison P, Dolezel J, Rouard M and Roux N (2007). Fundamental insights into the Musa genome based on EST and BAC sequences. Proceedings of Plant and Animal Genome XV Conference, 13–17 January 2007, San Diego, California, USA, Abstract no W31, p 12.   PDF

Serraj R, Cairns J, Atlin G, Kumar A, Bernier J, Li ZK, Brar D, McNally K, Leung H, Herve P, Bruskiewich R and Bennett J (2007). Drought resistant rice: an integrated crop improvement strategy. Molecular Plant Breeding, 5(2): 211-212.

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2009
Adamchuk VI, Villa J and Serraj R (2009). Application of Electromagnetic Sensing to Delineate Spatially Variable Soil Characteristics and Drought Susceptibility in Field-Managed Screening of Rice under Rainfed Lowland Conditions. Pedometrics 2009 - Biennial Meeting of Commission Pedometrics, of the International Union of Soil Science, August 25-28, Agricultural University Beijing, China.

Chin HJ (2009). Current research progress in the International Rice Research Institute.  1st PGBI seminar,  Plant Genomics and Breeding Institute, 22 June, College of Agriculture and Life Sciences, Seoul National University, Seoul, Korea.

Henry A, Torres R and Serraj R (2009). Dissecting the role of root architecture in drought avoidance mechanisms in rice. In: 20th Conference of the Federation of Crop Science Societies of the Philippines (FCSSP), May18-22 2009, Dumaguete, Philippines.

Heuer S (2009). Pup1- progress at IRRI. Paper presented at the GCP Challenge Initiative meeting, 09-11 March, Montpellier, France.

Heuer S (2009). Suitable rice for unsuitable environments-molecular breeding to improve food security of poor farmers and consumers. Paper presented at the University of Milano, 07 July, Italy.

Rathore A, Chandra, S, Mallikarjuna, G, Manna, S, Hoisington, D, McLaren, G, Davenport G and Crossa J (2009). iMAS: A Unified Computing and Decision Support System for Marker-Aided Breeding. Paper presented at EUCARPIA XIV Meeting of the Biometrics in Plant Breeding, September 1-4, 2009, Dundee, Scotland, UK.

Rathore A, Butterfield, MK, Hash T, Jayashree B, Mallikarjun G and Sravani M (2009) Further development and support for use of iMAS by NARS and the other user communities. Paper presented in GCP Annual Research Meeting, 20-23 September 2009, Bamako, Mali.

Serraj R, Gowda VRP, Henry A, Shashidhar HE, Chandrababu R and Kumar A (2009). Progress in phenotyping dehydration avoidance traits for drought resistance improvement in rice. In 3rd International Conference on Integrated Approaches to Improve Crop Production Under Drought-Prone Environments (InterDrought), Oct 11-16 2009, Shanghai, China. (Invited paper).

Wissuwa M, De Leon T, Chin JH, Pariasca Tanaka J, Ismail AM and Heuer S (2009). Sequence comparisons between rice genotypes reveal a complex genetic structure at the major QTL for phosphorus uptake Pup1. Invited presentation, PAG, 10-14 January, San Diego.

Wissuwa M, Pariasca-Tanaka J, Rose J, Gamuyao R, Chin JH, Heuer S (2009) Improving Tolerance to P deficiency in Rice using the Pup1 Locus. Oral presentation. Annual meeting of the Japanese Society of Soil Science and Plant Nutrition, 15-17 September 2009, Kyoto, Japan.


Zarkti H, Ouabbou H, Hillali A, Udupa SM, Taghouti M. (2009) Use of PCR-based markers for analysis of glutenin and gliadin genes in Moroccan durum wheat cultivars. Oral presentation at 3rd International SMBBM Congress of Biochemistry and Molecular Biology, April 20-24, 2009, held at Marrakech, Morocco. 

2008
Alpuerto, V, Norton GW, and Alwang J (2008). Economic impact analysis of marker-assisted breeding in rice. Selected paper presented at the American Agricultural Economics Association Annual Meeting, 27-29 July 2008, Orlando, USA.  

Alves AAC (2008). Drought tolerance improvement in cassava. Paper presented at the GCP Annual Research Meeting,  16-20 September 2008, Bangkok, Thailand.  PDF

Alves AAC (2008). Pré-melhoramento de mandioca: Utilização de espécies silvestres de mandioca como fonte de resistência a estresses bióticos e abióticos. Paper presented at the II Simpósio Brasileiro de Recursos Genéticos, 25-28 Novembro 2008, Embrapa Genetic Resources and Biotechnology, Hotel Nacional, Brasília-DF, Brasil.


Alves AAC, Mendes R, Silva A, Carvalho, PC and Costa I (2008). Current status of the Embrapa´s wild Manihot collection. Paper presented at the The Global Cassava Partnership Meeting-GCP-I, 21-25 July 2008, Ghent University, Institute of Plant Biotechnology for Developing Countries (IPBO), International Convention Center (ICC), Ghent, Belgium.

Alves AAC, Sampaio MJ and Costa I (2008). Cassava Biodiversity: Major Challenges. Paper presented at the The Global Cassava Partnership Meeting-GCP-I, 21-25 July 2008, Ghent University, Institute of Plant Biotechnology for Developing Countries (IPBO), International Convention Center (ICC), Ghent, Belgium.


Carrillo G, Oña I, Variar M, Goodwin P, Courtois B, Javier E, Lafitte R, Leach JE, Leung H,  Vera Cruz CM. (2008). Accumulating candidate genes for quantitative resistance to rice blast in a drought-tolerant cultivar using molecular and in silico approaches.  Paper presented at the Pest Management Council of the Philippines, Inc., 39th Anniversary and Annual Scientific Conference, 6-9 May 2008, Asturias Hotel, Puerto Princesa City, The Philippines.

Chin JH, Adorada D, Ona I, Mercado E, Penarubia M, Carrillo MG, Gregrio G, Athanson B, Brar DS, Vera Cruz C (2008). Development of rice blast markers and its application to classify African rice and O.glaberrima accessions. 2008. Paper presented at the conference on 5th International Crop Science Conference, 13-18 April 2008, International Convention Center, Jeju, Korea.

Gamuyao RL (2008). Molecular characterization of genes for tolerance of phosphorus deficiency in rice. Paper presented at meeting on Systems Biology for the Young Scientists, 03 December, Nagoya University, Japan.


Ghesquière A, Lorieux M and Ndjiondjop MN (2008). Rice improvement in Africa. Paper presented at GCP Annual Research Meeting,  16-20 September 2008, Bangkok, Thailand.

Heuer S (2008). Sub1 and Pup1: Application of two major stress tolerance rice QTLs. Paper presented at the International Symposium of Rice Functional Genomics, 10-12November 2008, Jeju, Korea.

2007
Agarcio JMS, Borines LM, Ordonez SA, Natural MP, Porter BW, White FF, Leung H, Vera Cruz CM and Redona E (2007). Bacterial blight resistant hybrid rice parental lines developed via bi-directional marker-aided selection. Paper presented at the 2nd International Conference on Bacterial Blight, 1–3 October, International Conference Center, Jinling Research Institute, Nanjing Agricultural University, Nanjing, Jiangsu Province, China.

Ahmadi N, Courtois B, Khowaja F, Price A, Frouin J, Hamelin C and Ruiz M (2007). Meta-analysis of QTLs involved in rice root development using a QTL database. Paper presented at international symposium Root biology and MAS strategies for drought resistance improvement in rice, 26–29 September 2007, UAS-Bangalore, India.

Alves AAC, Silva A, Queiroz D, Dita, M (2007). Avaliação de variedades de mandioca para tolerância à seca, em condições semi-áridas do Brasil. Paper presented at the XII Congresso Brasileiro de Mandioca, 23-26 Outubro 2007, Sociedade Brasileira de Mandioca, Teatro Municipal, Paranavaí, Brasil.

Bennett J, Leung H, Nelson R, George ML, Vera Cruz CM, Bernardo M, Sridhar R, Redoña E, Bustamam M, Singh K, Kangle Z, Quang VD, Sripongpankul K, Sharma R, Katiyar S, Huang BC (2005). Reaching the Breeders: Asian Rice Biotechnology Network. Paper presented at the 2005 GCP Annual Research Meeting, 29 September - 1 October 2005, Rome, Italy.

Bennett J, Ji XM, Shobbar ZS, Raveendran M, Liao DQ, Liu JX, Dolferus R, Tuberosa R, Satoh K, Mauleon R, Kikuchi S, Serraj R, McNally K, Bruskiewich R, Chandra Babu R, van den Ende W, Ye XQ and Ma ZQ (2007). Identifying genes responsible for failure of grain formation in rice and wheat under drought. Paper presented at GCP Annual Research Meeting, 12–16 September 2007, Benoni, South Africa
PowerPoint presentation

Carrillo MGC (2007). Primer and probe design for SNP-based genotyping. Paper presented at workshop on Low-cost gene-based technologies for MAS application in rice and maize, 25–27 April 2007, Barwale Knowledge and Study Center, Jalna, Maharashtra, India.

Carrillo G, Goodwin PH, Reveche MY, Leach J, Leung H and Vera Cruz CM (2007). QTLs meet genomics: genomic analyses of rice monocupins, candidate genes for quantitative resistance to rice blast. Paper presented at the 19th Annual Scientific Meeting, Federation of Crop Science Societies of The Philippines, 13–15 June 2007, Tagaytay City, The Philippines.

Chin JH and Mercado EF (2007). Development of microarray-based genotyping for MAS. Paper presented at workshop on Low-cost gene-based technologies for MAS application in rice and maize, 25–27 April 2007, Barwale Knowledge and Study Center, Jalna, Maharashtra, India.

Chin JH and Vera Cruz CM (2007). Data management on low-cost gene-based technologies for MAS. Paper presented at workshop on Low-cost gene-based technologies for MAS application in rice and maize, 25–27 April 2007, Barwale Knowledge and Study Center, Jalna, Maharashtra, India.

Ferguson ME, D. Kiambi D, Kawuki R, Salih S, Hash T and Hoisington D (2007). Tapping crop diversity for the resource poor in Eastern, Central and Southern Africa. Paper presented at Third General Meeting on Biotechnology, Breeding and Seed Systems for African Crops, The Rockefeller Foundation, 26–29 March 2007, Joaquim Chissano International Conference Centre, Maputo, Mozambique.

Fregene M, Okogbenin E, Egesi C, Hurtado P, Santos L, Barrera E, Gutierrez J, Guerrero J, Carabali A, Parkes E, Baguma Y, Kawuki R and Ceballos H (2007). Recent advances in genetic improvement of cassava. Paper presented at GCP Annual Research Meeting, 12–16 September 2007, Benoni, South Africa.
PowerPoint presentation


Heinemann AB, Andrade CLT, Gomide R, Albuquerque PEP and da Silva S C (2007). Determinação de padrões de estresse hídrico para a cultura do milho safra e safrinha no estado de Goiás. Paper presented at XV Congresso Brasileiro de Agrometeorologia, 2–5 July 2007, Aracaju, Brazil.

Heinemann AB, Luquet D, Dingkuhn M and Chapman S (2007). Análise da estratégia de melhoramento do milho safra em função dos estresses hídricos para Goiás. Paper presented at 4˚ Congresso Brasileiro de Melhoramento de Plantas, 23–26 April 2007, São Lourenço, Brazil.

Heinemann AB, Luquet D, Dingkuhn M and Chapman S (2007). Análise da estratégia de melhoramento do arroz ciclo em função dos estresses hídricos para Goiás. Paper presented at 4˚ Congresso Brasileiro de Melhoramento de Plantas, 23–26 April 2007, São Lourenço, Brazil.

Heinemann AB, da Silva SC, Amorim A and da Paz RL (2007). Determinação de padrões de estresse hídrico para a cultura de arroz no estado de Goiás. Paper presented at XV Congresso Brasileiro de Agrometeorologia, 2–5 July 2007, Aracaju, Brazil.

Heuer S (2007). Molecular breeding of stress tolerant rice: From genes to farmer’s fields. Invited speaker at Max Planck Institute of Molecular Plant Physiology, June 13, Golm, Germany.

Kochian LV and Magalhaes JV (2007) Aluminum tolerance in sorghum: molecular, genetic and physiological basis. Paper presented at GCP Annual Research Meeting, 12–16 September 2007, Benoni, South Africa.
PowerPoint presentation

Kochian LV and Magalhaes JV (2007) Crop aluminum tolerance: molecular and genetic investigations of a rhizosphere-mediated agronomic trait. Plenary talk presented at International Rhizosphere 2 Symposium, 25–31 August 2007, Montpellier, France.

Kochian LV and Magalhaes JV (2007) High resolution mapping, cloning and characterization of a major aluminum tolerance gene using sorghum as a model system. Invited seminar at the Section of Plant Biology, University of California, Davis, 26 January 2007, Davis, California, USA.

Kochian LV and Magalhaes JV (2007) Identification and characterization of a key aluminum tolerance gene using sorghum as a model system. Invited seminar at The Noble Foundation, 11 April 2007, Ardmore, Oklahoma, USA.

Kochian LV and Magalhaes JV (2007). Identification and characterization of novel aluminum tolerance genes in cereal crops. Paper presented at USA-Pakistan Symposium on Plant Stress Biology, 4–5 November 2007, University of California, Davis, USA

Kochian LV and Magalhaes JV (2007) Map-based cloning and characterization of a novel aluminum tolerance gene in sorghum encoding an Al-activated citrate transporter. Invited seminar at the Delaware Biotechnology Institute, 18 October 2007, University of Delaware, USA.

Kullaya A, Mkamilo G, Mtunda K, Kulembeka H, Masumba E, Kanju E, Ferguson M, Ospina C, Marin E-J, Santos L-G, Barrera E, Morante N, Ceballos H, Jarvis A, Tohme J and Fregene M (2007). Application of molecular marker-assisted selection in breeding for improved farmer/market preferred cassava varieties in Tanzania. Paper presented at the 10th Triennial Symposium on Root and Tuber Crops for Poverty Alleviation Through Science and Technology for Sustainable Development organised by International Society for Tropical Root Crops-Africa Branch and Instituto de Investigação Agrária de Moçambique, 8–12 October 2007, Maputo, Mozambique.

Leach J, Manosalva P, Davidson R, Lee S, Bruce M, Diaz MG, Liu B, Vera Cruz C, Leung H (2007). Approaches to durable resistance in rice.  Abstract for Cold Spring Harbor Symposium: Plant Genomics, 13-15 March 2007, Cold Spring Harbor, New York, USA. 


Leach JE, Webb KM, Bai J, Oña I, Bruce M, Manosalva P, Lee S, Stephens J, Garrett K, Mew TW and Vera Cruz CM (2007). Understanding Xanthomonas oryzae/rice interactions to guide disease control. Keynote address presented at the 2nd International Conference on Bacterial Blight, 1–3 October 2007, International Conference Center, Jinling Research Institute, Nanjing Agricultural University, Nanjing, Jiangsu Province, China.

Magalhaes JV and Kochian LV (2007) Tailoring superior alleles for abiotic stress genes for deployment into breeding programs: a case study based on association analysis of AltSB, a major aluminum tolerance gene in sorghum. Paper presented at GCP Annual Research Meeting, 12–16 September 2007, Benoni, South Africa.
PowerPoint presentation


Mercado EF and Chin JH (2007). Microtiter plate assay (PCR-ELISA TM): genotyping for MAS. Paper presented at workshop on Low-cost gene-based technologies for MAS application in rice and maize, 25–27 April 2007, Barwale Knowledge and Study Center, Jalna, Maharashtra, India.

Nayak S, Jayashree B, Hoisington D and Varshney RK. 2007. Updates on DREB research at ICRISAT. In: ADOC Project Meeting, April 26-27, 2007, CIRAD, Montpellier, France.

Okogbenin E, Egesi C, Okai E, Mba C, Espinosa E, Guillermo Santos C, Ospina C, Marin J, Barera E, Gutierrez J, Mbanaso E, Gomez H and Fregene M (2007). Development and use of markers for virus resistance in cassava: impact on cassava breeding in Africa. Paper presented at GCP Annual Research Meeting, 12–16 September 2007, Benoni, South Africa.
PowerPoint presentation

Reveche MYV, Mercado EFL, Chen J, Collard B, Chin JH, Carrillo MGC, Wu J, Skinner D, Xu Y, Bernardo M, Bustamam M, Agarcio J, Joshi D, Sanchez D, Mackill DJ, Crouch J and Vera Cruz CM (2007). High throughput gene-based MAS technologies in cereals. Paper presented at 6th Asian Crop Science Association Conference as part of BioAsia 200: Technology for self-sufficient agriculture in Asia, 5–9 November 2007, Queen Sirikit National Convention Center, Bangkok, Thailand.

Reveche MY, Skinner D and Mecado EF (2007). The dot-blot method for SNP detection in marker-assisted selection. Paper presented at workshop on Low-cost gene-based technologies for MAS application in rice and maize, 25–27 April 2007, Barwale Knowledge and Study Center, Jalna, Maharashtra, India.

Skinner D and Krivanek A (2007). Quality protein maize. Paper presented at workshop on Low-cost gene-based technologies for MAS application in rice and maize, 25–27 April 2007, Barwale Knowledge and Study Center, Jalna, Maharashtra, India.

Soós V, Juhász A, Light ME, Van Staden J abd Balázs E (2007). Genes behind smoke action 15th Research Centre for Plant Growth and Development (RCPGD) Annual Meeting, 17-19 November 2007, Pietermaritzburg, South Africa.

This D and Varshney R 2007. Drought tolerance: evolution of candidate gene families and allelic diversity studies. In Abiotic stress in legumes (MLC satellite workshop), 22-25 march 2007, Tunis, Tunisia.

Thomson MJ, de Ocampo M, Egdane J, Katimbang M, Rahman MA, Singh RK, Gregorio GB and Ismail AM (2007). QTL mapping and marker-assisted backcrossing for improved salinity tolerance in rice. Paper presented at 2nd International Conference on Rice for the Future: BioAsia 2007, 9 November 2007, Bangkok, Thailand.

Vadez V, Hash CT, Rizvi SMH, Bidinger FR, Banttee, K, Sharma KK, Devi JM, Bhatnagar-Mathur P, Kashiwagi J, Krishnamurthy L, Hoisington D, Varshney RK, Gaur PM, Nigam SN, Aruna R and Upadhyaya HD (2007). What is the scope for molecular breeding and genetic engineering to improve crops’ drought tolerance? In: “Changing lives” (Serageldin I and Masood E eds), proceeding of the 4th BioVision Conference (2006), Biblioteca Alexandrina, Alexandria, Egypt.

Variar M, Vera Cruz CM, Carrillo MG, Bhatt JC, Sangar RBS. (2007). Rice blast in India and strategies to develop durably resistant cultivars. Paper presented at Proc 4th International Rice Blast Conference, 9-14 October 2007, Changsha, Hunan, China.

van Eeuwijk FA (2007). QTLxE, and MAS? An eco-physiological – statistical framework for the analysis of GxEand QTLxEas occurring in abiotic stress trials, with applications to the CIMMYT drought stress programs in tropical maize and bread wheat. Paper presented at GCP Annual Research Meeting, 12–16 September 2007, Benoni, South Africa.
PowerPoint presentation

Varshney RK and Hoisington D 2007. Genomics-assisted breeding for crop improvement: prospects, achievements and constraints. In: Fourth International Training Programme on Molecular Marker Techniques and Gene Gun use in Crop Improvement, University of Agricultural Sciences, GKVK, January 17- February 6, 2007, Bangalore, India. 

Varshney RK, Hoisington DA, Gaur PM, Nigam SN, Saxena K, Vadez V, Kashiwagi JK, Nayak S, Varghese N, Rao AKS, Reddy PS, Saxena R and  Prathima C. 2007. Legume genomics research at ICRISAT. In:  Annual Meeting of the Legume Evolution Project, NSF Plant Genome Research Program, August 13-16, 2007, Skamania Lodge, Stevenson, WA, USA. 

Varshney RK, Hoisington D, Gaur PM, Saxena KB, Nigam SN, Rupakula R, Vadez V, Kashiwagi J, Srinivasan R, Gowda MVC, Singh NK, May G, Killian A and Cook DR. 2007. Genomics-enabled legume improvement: prospects and constraints. In: National Symposium on Legumes for Ecological Sustainability: Emerging Challenges and Opportunities, IIPR Kanpur, November 3-5, 2007. 


Varshney RK, Hoisington D, Kashiwagi J, Gaur PM, Upadhyaya U, Chandra S, Abbo S, Nayak S and Winter P. (2007). Genetics and physiology of root traits for enhancing molecular breeding strategies for drought tolerance in chickpea (Cicer arietinum L.). In: Root Genomics workshop, International Plant and Animal Genomes XV conference, 13- 17 January 2007, San Diego, USA.

Varshney RK, Hoisington D, Kashiwagi J, PM Gaur, Upadhyaya H, Chandra S, Nayak S, Jayashree B, Dominique This, Winter P. 2007. Genomics and physiological approaches for enhancing molecular breeding strategies for drought tolerance in chickpea (Cicer arietinum L.) In: Targeting Science to Real Needs, First Grain Legume Transfer Technology Platform, 23-25 April 2007, Paris, France.  

Variar M, Vera Cruz CM, Carrillo G, Bhatt JC and Sangar RBS (2007). Defense response genes contributing to race non-specific resistance to blast in rainfed upland rice. Paper presented at 4th International Rice Blast Conference, 10–13 October 2007, Hunan, China.

Vera Cruz CM, Agarcio JM, Borines L, Ordoñez SA, Baliuag N, De la Cruz A, Tabanao DA, Natural MP, Porter BW, White FF, Leung H and Redoña ED (2007). Improving resistance of hybrid rice parental lines to bacterial blight. Paper presented at International Symposium on Hybrid Rice and Agro-ecosystem, 23–24 November 2007, Hanoi University of Agriculture, Gialam, Hanoi, Vietnam.

Vera Cruz CM, Mercado EFL, Reveche MYV, Chen J, Skinner DJ, Carrillo MGC, Collard BC, Bernardo M, William M and Xu Y (2007). SNP detection in marker-assisted selection: dot-blot assay. Paper presented at VII MAS training-cum-workshop: applications of MAS for crop improvement, 20–24 August 2007, Barwale Foundation Research and Training Centre, Hyderabad, India.

Vera Cruz CM, Mercado EFL, Reveche MYV, Chen J, Skinner DJ, Carrillo MGC, Collard BC, Bernardo M, William M, Xu Y and Crouch JH (2007). Development and application of low-cost gene-based trait assay technologies in cereals. Seminar presented at the Directorate of Rice Research (DRR), 22 August 2007, Hyderabad, India.
 
Vera Cruz CM, Oña I, Reveche MY, Webb KM, Carrillo G, Dac Khoa N, Quiatchon L, Virk P, Bustamam M, Agarcio J, Wu J, Singh K, Jena KK, Mew TW and Leach JE (2007). Impact of gene pyramids on Xanthomonas oryzae pv oryzae population structures–implications for deployment of Xa genes. Paper presented at 2nd International Conference on Bacterial Blight, 1–3 October 2007, International Conference Center, Jinling Research Institute, Nanjing Agricultural University, Nanjing, Jiangsu Province, China.

Vera Cruz CM, Reveche MYV, Mercado EFL, Chen J, Chin JH, Skinner DJ and Bernardo M (2007). Development of FRET-based SNP assay for MAS. Paper presented at VII MAS training-cum-workshop: applications of MAS for crop improvement, 20–24 August 2007, Barwale Foundation Research and Training Centre, Hyderabad, India.

Vera Cruz CM, Reveche MYV, Oña I, Carrillo G, Mercado E, Begum S, Bustamam M, Redoña E, Webb K and Leach JE (2007). Marker-assisted selection application for improving resistance to bacterial blight. Paper presented at workshop on Low-cost gene-based technologies for MAS application in rice and maize, 25–27 April 2007, Barwale Knowledge and Study Center, Jalna, Maharashtra, India,
38. Verdier V (2007) Characterization of new strains of Xanthomonas oryzae pv oryzae in Africa and implication for breeding. Paper presented at workshop on Low-cost gene-based technologies for MAS application in rice and maize, 25–27 April 2007, Barwale Knowledge and Study Center, Jalna, Maharashtra, India.

Verdier V (2007) Characterization of new strains of Xanthomonas oryzae pv. oryzae in Africa and implication for breeding. Paper presented at the Workshop on Low-cost gene-based technologies for MAS application in rice and maize, 25 – 27 April 2007, Barwale Knowledge and Study Center, Jalna, Maharashtra, India.

Xu Y and Crouch JH (2007). Marker-assisted selection in plant breeding: from publications to practice. Paper presented at 2nd International Conference on Plant Molecular Breeding, 23–27 March, 2007, Sanya, Hainan, China,

Xu Y and Crouch JH (2007). Marker-assisted selection in plant breeding: from publications to practice. Paper presented at workshop on Low-cost gene-based technologies for MAS application in rice and maize, 25–27 April 2007, Barwale Knowledge and Study Center, Jalna, Maharashtra, India.

Xu Y, Skinner DJ and Crouch JH (2007). Single seed-based MAS. Paper presented at workshop on Low-cost gene-based technologies for MAS application in rice and maize, 25–27 April 2007, Barwale Knowledge and Study Center, Jalna, Maharashtra, India.

Zaharieva M, Dreisigacker S, Bedoya C, Kishii M, Mujeeb-Kazi A, Payne P and Warburton M (2007). Exploiting untapped wild genetic diversity for CIMMYT wheat improvement. Paper presented at 18th EUCARPIA Genetic Resources Section Meeting, May 23–26, 2007, Piestany, Slovac Republic.

«back to Papers presented at workshops and conferences»
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2006
Alves AAC, Fregene M, Ceballos H, Setter T, Ferguson M, Mkamilo G and Osei C (2006). Identifying the physiological and genetic traits that make cassava one of the most drought tolerant crops. Paper presented at the Annual Research Meeting of the Generation Challenge Programme, 12-16 September 2006, Caesar Business Hotel, São Paulo, Brazil. 

Azhar Mohamad and J.S. Heslop-Harrison  (2006). DNA and Genome Diversity in Bananas and Plantains (Musa). OECD meeting on Plant Domestication, Tsukuba, Japan October 2006

Bakry F, Baurens FC, Heslop-Harrison  J.S, Hippolyte I,  Matsumoto M, Miller R.G,  Rouard M, Roux N, Souza M, Sasaki T (2006). Targeted Musa Genome Sequencing and Frame Map Construction. GCP Annual Research Meeting, Sao Paulo, Brazil

2005
Alves AAC (2005). Cassava Drought Physiology. Paper presented at the Annual Research Meeting of the Generation Challenge Programme, 29 September - 01 October 2005, Hilton Hotel, Rome, Italy. 

Bellotti A, Fregene M, Alves E, Santos L, Barrera E, Gutierrez J, Alves A, Okogbenin E,  Egesi C, Okai E, Baguma Y, Kawuki R, de Vicente C, and Ceballos H (2005).  Development of Low-Cost Marker Technologies for Pyramiding Useful Gene from Wild Relatives of Cassava into Elite Progenitors. Proceedings of the 2005 GCP Annual Research Meeting, 29 September- 1 October 2005, Rome, Italy.  

Carrillo G, Wu J, Liu B, Oña I, Sugiyama N, Variar M, Courtois B, Leach J, Goodwin P., Leung H. Vera Cruz C (2005). In silico and molecular approaches for associating candidate defense genes with quantitative resistance to rice blast. Phytopathology 95:S517.

McNally KL, Wang H, Naredo ME, Carrillo G, Till BJ, Greene EA, Henikoff S, Comai L, Vera Cruz C, Leung H (2004). EcoTILLING Stress Tolerance Genes in Cultivated and Wild Rice. Paper presented at the 2nd International Symposium on Rice Functional Genomics, 15-17 November 2004, Tucson, AZ, USA.

8). Learning materials and other resources

2009
2008
2007
2005

2007
IRRI (2007). Managing Source Code on CropForge: A guide to begin using the CropForge collaborative software development site for source code management - PDF

IRRI (2007). Beginning with TortoiseCVS: A guide to begin using the TortoiseCVS client for source code management on the CropForge collaborative software development site - PDF
 
IRRI (2007).  Daily use of TortoiseCVS: A guide to the commonly used functions of the TortoiseCVS client for source code management on the CropForge collaborative software development site. - PDF

IRRI (2007). Beginning with SubclipseSVN: A user guide to begin using the Subclipse for source code management on the CropForge collaborative software development site - PDF

IRRI (2007). Daily use of SubclipseSVN: A user guide to the commonly used functions of the Subclipse client for source code management on the CropForge collaborative software development site. - PDF

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2005
Louwaars N. (Ed.) 2005. Genetic Resource Policies and the Generation Challenge Programme. Mexico D.F.: Generation Challenge Programme, 102 p. PDF

Metz T (2005). Collaborative Content Development in the GCP: The Wiki Way - Information brochure distributed at the 2005 GCP Annual Research Meeting, 29 September - 1 October 2005, Rome, Italy. - PDF

(No year provided)--Baum, Michael: Genstat programs to assess marker/allele–trait association in single environment/multi-environment situations (not documented, but used for computations).

2009
Berra S, Gaboun F, Udupa SM, Soukri A, Abbad Andaloussi F, (2009). In silico analysis of candidate genes of agronomic important in cereals for molecular marker development. Abstract of poster presentation at 3rd International SMBBM Congress of Biochemistry and Molecular Biology, 20-24 April 2009, held at Marrakech, Morocco, Pp. 114. Abstract.

Bimpong IK, Mendoza EMT, Serraj R, Hernandez J, Mendioro MS, Ramos J, Brar DS. (2009). Identification of QTLs for agronomic traits in crosses of rice (Oryza sativa) x O. Glaberrima under drought stress. In 3rd International Conference on Integrated Approaches to Improve Crop Production Under Drought-Prone Environments (InterDrought), Oct.11-16, Shanghai, China (accepted). 

Bimpong IK, Mendoza EMT, Serraj R, Mendioro MS, Ramos J, Hernandez J, Kumar A and Brar DS. (2009). Identification of QTLs for agronomic traits under lowland drought stress in interspecific crosses of rice (Oryza sativa cv IR64) x O. Glaberrima. In: 21st Conference of the Federation of Crop Science Societies of the Philippines (FCSSP), May18-22, Dumaguete, Philippines.

Bustamam M, Prasetiyono J, Somantri IH, Suhartini T, Abdulrahman S, Moeljopawiro S, Chin JH, Wissuwa M, Ismail AM, Heuer S (2009). Introgression of the Pup1 major QTL into modern Indonesian upland rice varieties using marker-assisted backcrossing. Poster presented at the 6th International Rice Genetics Symposium, 16-19 November 2009, Manila, Philippines.

Chin JH, Dalid CO, Gamuyao RL, Amarante S, Siopongco J, Trinidad J, Wissuwa M, Haefele SM and Heuer S (2009). Development and application of gene-based markers for the major QTL Phosphorus uptake 1 (Pup1). Poster presented at the 6th International Rice Genetics Symposium, 16-19 November 2009, Manila, Philippines.

Cseh A, Kruppa K and Molnár I (2009). Incorporation of a winter barley chromosome segment into cultivated wheat and its characterization with GISH, FISH and SSR markers. Poster presented at 8th Alps Adria Scientific Workshop, 27 April - 2 May, 2009, Neum, Bosnia-Herzegovina. PDF

Dalid CO, Chin JH, Trinidad JL, Gamuyao RL, Haefele S, Ismail AM, Wissuwa M and Heuer S (2009). Application of the major QTL Phosphate uptake 1 (Pup1). Poster presented at 20th Scientific Conference of the Federation of Crop Science Societies of the Philippines, 18-23 May 2009, Silliman University, Dumaguete City, Philippines.

Diop N, Chuieh S, Muchero W, Pottorff M, Fenton R, Cisse, N, Drabo I, Roberts P, Close T, Ehlers J (2010). QTL mining for drought avoidance mechanisms at flowering time in cowpea [Vigna unguiculata (L.) Walp]. Poster presented at Plant and Animal Genome (PAG) XVIII Conference, 9–13 January 2010, San Diego, CA., USA.

Dulai S, Molnár I and Molnár-Láng M (2009). Comparative analysis of thermal tolerance in wild wheat genotypes. XV. Növénynemesítési Tudományos Napok 2009. március 17. Poster presented at 15th Annual Meeting on Plant Breeding, 17th March, 2009, Budapest. PDF

Gamuyao RL, Trinidad J, Chin JH, Wissuwa M and Heuer S (2009). Towards the functional validation of genes at the major rice QTL Phosphorus Uptake 1 (Pup1). Poster presented at the 6th International Rice Genetics Symposium, 16-19 November 2009, Manila, Philippines.

Gowda VRP, Serraj R, Henry A and Shashidhar HE (2009). Assessing the role of root traits in water uptake and maintenance of plant growth in the rice OryzaSNP accessions. In 3rd International Conference on Integrated Approaches to Improve Crop Production Under Drought-Prone Environments (InterDrought), Oct.11-16, Shanghai, China (accepted).

Guan Y, Zhikang Li and Serraj R. (2009). Morpho-physiological traits and yield performance of drought-resistant rice lines developed by designed QTL pyramiding. In 3rd International Conference on Integrated Approaches to Improve Crop Production Under Drought-Prone Environments (InterDrought), Oct 11-16, Shanghai, China (accepted).

Henry A, Gowda VRP and Serraj R. (2009). Dissecting the role of root architecture in dehydration avoidance mechanisms in rice. In 3rd International Conference on Integrated Approaches to Improve Crop Production Under Drought-Prone Environments (InterDrought), Oct.11-16, Shanghai, China (accepted).

Hong He, Sellamuthu R and Serraj R. (2009). Physiological and biochemical regulation of rice spikelet sterility under reproductive-stage water deficit. In 3rd International Conference on Integrated Approaches to Improve Crop Production Under Drought-Prone Environments (InterDrought), Oct.11-16, Shanghai, China.

Kijoji AA, Nchimbi-Msolla S, Serraj R and Kanyeka ZL. (2009). Screening Oyza glaberrima and O. sativa interspecific progenies for drought resistance in field-managed nurseries. In 3rd International Conference on Integrated Approaches to Improve Crop Production Under Drought-Prone Environments (InterDrought), Oct.11-16, Shanghai, China (accepted).

Hoffmann B, Aranyi NR and Molnár-Láng M (2009). Hybridization with related species increases the stress tolerance of winter wheat. XV. Növénynemesítési Tudományos Napok 2009. március 17 Poster presented at 15th Annual Meeting on Plant Breeding, 17th March, 2009, Budapest. PPT

Kruppa K, Cseh A and Molnár-Láng M (2009). Identification of barley chromosomes in derivatives of new wheat/barley hybrids using in situ hybridization and SSR markers. XV. Növénynemesítési Tudományos Napok 2009. március 17. pp. 277-281. Poster presented at 15th Annual Meeting on Plant Breeding, 17th March, 2009, Budapest. PDF

Kruppa K, Szakács É, Cseh A and Molnár-Láng M (2009). identification of new winter wheat/ winter barley disomic addition lines using fluoescent in situ hybridisation and molecular markers. VIII. Magyar Genetikai Kongresszus XV. Sejt- és Fejlődésbiológiai Napok Nyíregyháza, 2009. április 17-19. Poster presented at 8th Hungarian Genetic Conference, 15th Cell- and Development Biology Days, 17-19th April, 2009, Nyíregyháza, Hungary. PDF

Makdis F, Abdalla O, Hakim MS, Ogbonnaya FC (2009). Characterization of drought adaptive traits for the improvement of bread wheat in Mediterranean. Poster presented at the 3rd International Conference on Integrated Approaches to Improve Crop Production Under Drought-Prone Environments (InterDrought III), 11–16 October 2009, Shanghai, China.

Molnár-Láng, M, Szakács, É, Molnár I, Kruppa K, Sepsi A, Cseh A, Dulai S, Aranyi N and Hoffmann B (2009). Molecular cytogenetic identification, physical mapping and phenotyping of wheat-barley introgression lines. Poster presented at 8th International Symposium on “New development in green gene technology”, 1-4 September 2009, Szeged, Hungary. PDF

Ogbonnaya FC, Dreccer F, Abdalla O, Condon T, Ouabbou H, Udupa SM, Gelacha S, Reynolds M, Bonnett D (2009). Phenotyping tools to select for adaptive traits in drought environments. Poster presented at the Generation Challenge Programme 2009 Annual Research Meeting, 20–23 September 2009, Bamako, Mali. PDF. Abstract p 42 in 2009 Poster abstracts

Pottorff M, Ehlers J, Roberts P, Close T (2010) Identifying resistance to Fusarium oxysporum f.sp. traicheiphilum Race 3 and Race 4 in cowpea [Vigna unguiculata (L.) Walp]. Poster presented at Plant and Animal Genome (PAG) XVIII Conference, 9–13 January 2010, San Diego, CA., USA.

Sellamuthu R, Hong H, Chandra Babu R and Serraj R. (2009). Phenotyping and genetic analysis of spikelet fertility and reproductive stage traits in rice under water deficit. In 3rd International Conference on Integrated Approaches to Improve Crop Production Under Drought-Prone Environments (InterDrought), Oct.11-16, Shanghai, China.

Sepsi A and Bucsi J (2009). Physical mapping of the 7D chromosome using a wheat/barley translocation line (5HS.7DL) produced in Martonvásári wheat background using microsatellite markers. Poster presented at 8th Alps Adria Scientific Workshop, 27 April- 2 May, 2009, Neum, Bosnia-Herzegovina. PDF

Tignegre JB, Satoru M, Ouedraogo JT, Drabo I, Boukar O, Moutari N and Toure M (2009). Combining marker-assisted and farmer variety selections for Striga resistance in cowpea (Vigna unguiculata (L.) WALP). Poster presented at the GCP Annual Research Meeting, 20-23 September 2009, Bamako, Mali. Abstract p 39 in 2009 Poster abstracts

Tovar C, Hyman G, Wood S, Tenorio MT, de Vicente C, Asumugha G, Lokollo E, Kasambala S, Ouedraogo M and Diakite L (2009). Assessment of National Capacity to Utilise GCP Technologies in Five Case Study Countries. Poster presented at the GCP 2009 Annual Research Meeting, 20-23 September 2009, Bamako, Mali. PDF. Abstract p 67 in 2009 Poster abstracts.

Trinidad J, Gamuyao RL, Chin JH, Dalid CO, Haefele S, Wissuwa M and Heuer S (2009). Candidate genes in the major rice QTL Phosphate uptake 1 (Pup1). Poster presented at 20th Scientific Conference of the Federation of Crop Science Societies of the Philippines, 18-23 May 2009, Silliman University, Dumaguete City, Philippines.

Upadhyaya HD, Dwivedi SL, Vadez V , Hash CT , Krishnamurthy L, Clerget B, Weltzein-Rattunde E, Mgonja MA, Salimath PM, Karari CK, Ntundu W, Diourte M, and Cisse M (2009).  Phenotyping sorghum reference set for drought to be presented in GCP Annual Research Meeting, 20-23 Sept., 2009, Bamako, Mali. Abstract p 11 in 2009 Poster abstracts

2008
Alves A, Dita M, Silva A, Oliveira A and Setter T (2008). Evaluation of drought tolerance in contrasting cassava varieties under a Brazilian semi-arid environment. Poster presented at the First Scientific Meeting of the Global Cassava Partnership (GCP-I), Ghent, Belgium, 21-25 July 2008. PDF  

Mutegi R, Ferguson M, Maass BL, Mkamilo G, Kamau J, Adjebeng-Danquah J, Alves A, Setter T, Fregene M (2008). Field evaluation of cassava varieties under drought stress in Kenya, Tanzania and Ghana. Poster presented at the First Scientific Meeting of the Global Cassava Partnership (GCP-I), 21-25 July 2008, Ghent, Belgium. PDF

Mutegi R, Ferguson M, Maass BL, Mkamilo G, Kamau J, Adjebeng-Danquah J, Alves A, Setter T and Fregene (2008). Field evaluation of cassava varieties under drought stress in Kenya, Tanzania and Ghana. Poster presented at GCP Annual Research Meeting, 16-20 September 2008, Bangkok, Thailand. PDF

Nayak S, Jayashree B, Chattopadhyay D, Upadhyaya H, Hash T, KaviKishor PB, Baum M, McNally K, Rodriquez L, Blair MW, This D, Hoisington DA and Varshney RK (2008). Isolation and sequence analysis of DREB2A homologs in five crop species. Poster presented at Plant and Animal Genome XVI Conference, 12-16 January 2008, San Diego, USA. (PDF not available).  

Nayak S, Mamo BE, Varghese N, Penmetsa RV, Farmer AD, Woodward J, Gao J, Hoisington DA, May GD, Bruening G, Varshney RK, Cook DR (2008). BAC-end associated microsatellites in Chickpea (Cicer arietinum) and Cowpea (Vigna unguiculata): A resource for genetic and physical mapping. Poster presented at Plant and Animal Genome XVI conference, 12-16 January 2008, San Diego, USA. (PDF not available).

Nakhoda B, Leung H, Egdane J, Ismail AM (2008).  Responses of tolerant and sensitive rice mutants to salt stress at seedling stage. 5th International Crop Science Conference, 13-18 April 2008, Jeju, Korea. PDF

Nakhoda B, Leung H, Egdane J, Mendioro MS, Mackill D, Ismail AM (2008).  Novel IR64 mutant lines with contrasting phenotypes under salt stress.  International Symposium on Induced Mutation in Plants, 12-15 August 2008, Vienna, Austria. PDF

Nakhoda B, Leung H, Egdane J, Mendioro MS, Mackill D, Ismail AM (2008).  Field evaluation of IR64 mutants with altered responses to salt stress under saline and normal conditions. International Symposium on Induced Mutation in Plants, 12-15 August 2008, Vienna, Austria. PDF

Nakhoda B, Katimbang MB, Egdane J, Zantua RE, Thomson MJ, Leung H, Ismail AM (2008). A knockout mutant population for forward and reverse genetics for salt tolerance in rice. The 38th Crop Science Society of the Philippines, 12-16 May 2008, Iloilo City, Philippines. PDF

Ndjiondjop MN, Dramé KN, Djedatin G, Thiemele D,Manneh B, Fousseyni C, Yao N, Verdier V,Sere Y, Sanchez I, Lorieux M, 4 and Ghesquiere A (2008). Identification of sources of resistance to drought, rice yellow mottle virus (RYMV) and African bacterial leaf blight (Xanthomonas oryzae pv.Oryzae) in African rice (O. glaberrima) and interspecific lines. Poster presented at GCP Annual Research Meeting,  16-20 September 2008, Bangkok, Thailand. PDF  Abstract p.7 in 2008 Poster abstracts 

Noronha A, Boaventura V, Cavalcante A, Caldas R and Alves A (2008). Manihot wild species as source of resistance to cassava green mites. Poster presented at the First Scientific Meeting of the Global Cassava Partnership (GCP-I), 21-25 July 2008, Ghent, Belgium. PDF

Norton G, Alpuerto, V, Tudi, N, Ismail, I, Fregene, M, Okogbenin, and C Chiedozie (2008). Marker-Assisted Selection on Rice and Cassava: What is it Worth? Poster presented at the GCP Annual Research Meeting, 16-20 September 2008, Bangkok, Thailand. PDF

Okogbenin E, Egesi C, Olasanmi B, Mba C, Kahya S, Cesar O, Hurtado P, Marin J, Gomez H, de Vicente C, and Fregene M (2008). SSR analysis of F1, intra specific crosses of cassava for the identification of new sources of CMD resistance in African germplasm. Poster presented at the First Scientific Meeting of the Global Cassava Partnership, 21-25 July 2008, Ghent, Belgium. PDF

Okogbenin E, Egesi C, Mbanaso E, Ogbe F and Fregene M (2008). Development of cassava germplasm resources for the improvement of high value root quality traits through induced mutation and marker aided breeding in Nigeria. Poster presented at the FAO/IAEA International Symposium on Induced Mutations in Plants, 12-15 August  2008, Vienna, Austria. PDF

Park CH, Jung KH, Phetsom J, Babu MR, Bruce M , Mauleon R, Bordeos A, Bellizzi M, Leach J, Leung H, Ronald P and Wang GL (2008). Characterization of rice defense mutants using whole genome expression profiling. Poster presented at the Plant and Animal Genome XVI Conference, 12-16 January 2008, San Diego, California, USA.  PDF

Penmetsa RV, Gao J, Sarma BK, Carrasquilla GN, Rosen B, Varshney RK, Bruening G and Cook DR (2008). Genome organization and diversity within a legume species as assessed by two DNA marker types: Conserved Orthologous Sequence (COS) and simple sequence repeat (SSR). Poster presented at Plant and Animal Genome XVI conference, 12-16 January 2008, San Diego, USA. (PDF not available).

Philippe R, Courtois B, Billot C, D’Hont A, Brunel D, Baum M, Hash T, McNally K, Zivy M, Glaszmann JC and This D. Allelic diversity at orthologous candidate genes for drought tolerance in cereal crops: example of the ASR gene family. Poster presented at Plant and Animal Genome XVI Conference, 12-16 January 2008, San Diego, California, USA.

Poland J, The Maize Diversity Project, and Nelson R (2008). Uncovering molecular mechanisms of quantitative disease resistance using nested association mapping. Poster presented at the 50th Maize Genetics Conference, 27 February–2 March 2008, Washington DC, USA. PDF

Poland J and Nelson RJ (2008). Uncovering molecular mechanisms of quantitative disease resistance Using Nested Association Mapping. Presented at the 50th Annual Maize Genetics Conference, 27 February–2 March 2008, Washington DC, USA. PDF

Rajesh PN, Avcioglu B, Nayak S, Winter P, Varshney RK, McPhee K, Hongbin Z, Muehlbauer FJ and Chen W (2008). Integration of additional molecular markers and genetic analysis of Ascochyta blight resistance in chickpea. Poster presented at Plant and Animal Genome XVI conference, 12-16 January 2008, San Diego, USA.  (PDF not available).

Rizvi R, Serraj R, Hash CT, Vadez V. (2008). Screening for phosphorus acquisition ability from rock phosphate in pearl millet mapping population parents. 4th EPSO Conference “Plants for Life”, 22-26 June, Toulon, France.

Satoh K, Shimizu T, Ooka H, Yamada-Akiyama H, Tasaki K, Lee JS, Omura T and Kikuchi S (2008). Comparative analysis Of gene expression profiles between virus-infected and abiotic stress-treated rice seedlings. Poster presented at Plant & Animal Genomes XVI Conference, 12-16 January 2008, San Diego, California, USA.

Saxena RK, Saxena KB, Kumar RV and Varshney RK. (2008). Enhancing efficiency of hybrid pigeonpea breeding  through genomics. Poster presented at GCP Annual Research Meeting 16- 20th September 2008, Bangkok, Thailand. PDF  Abstract p 42 in 2008 Poster abstracts

Setter T, Duque L and Alves A (2008). Drought tolerance mechanisms in cassava. Poster presented at the First Scientific Meeting of the Global Cassava Partnership (GCP-I), 21-25 July 2008, Ghent, Belgium. PDF

Soós V, Sebestyén E, Juhász A, Light ME, Van Staden J, Balázs E (2008): The effect of smoke on maize kernel germination and seedling vigour. Poster presented at the GCP Annual Research Meeting, 16-20 September 2008, Bangkok, Thailand. PDF   Abstract p 30 in 2008 Poster abstracts

Taghouti M, Rhrib K, Nsarellah N and Udupa SM (2008). Quality and Productivity of Moroccan Durum Wheat Varieties. From seed to Pasta: The durum wheat chain, International Durum Wheat Symposium, Bologna Italy, 1 - 4 July 2008, abstract, p. 214 Poster

Tavares Filho LFQ, Alves AAC, Ledo CAS, Sarmento CAR and Santos AS (2008). Compatibilidade de cruzamentos interespecíficos entre mandioca e espécies silvestres de Manihot. Poster presented at II Simpósio Brasileiro de Recursos Genéticos, 25-28 Novembro 2008, Brasília, Brasil. PDF

Tavares Filho LFQ, Alves AAC, Ledo CAS, Sarmento CAR and Santos AS (2008). Metodologia para hibridação interespecífica entre mandioca e espécies silvestres de Manihot. Poster presented at II Simpósio Brasileiro de Recursos Genéticos, 25-28 Novembro 2008, Brasília, Brasil. PDF

This D, Courtois B, Billot C,  Rami JF, Philippe R,  Mournet P, Bonierbale M, Schaftleiner R, Simon R,  Rojas P,  Varshney RK, Hash CT, Hoisingto DA,  Nayak P,  Upadhyaya HD, Brunel D, McNally K,  Baum M,  Choumane W,  Blair M, and Fregene M (2008). Comparison of the DR of the GCP SSR data sets showed that the DR varied widely, also when the number of markers is taken into account. Poster presented at GCP Annual Research Meeting 16- 20th September 2008, Bangkok, Thailand. PDF  Abstract p 3 in 2008 Poster abstracts

This D, Philippe R, Mournet P, Billot C, Rami JF, Courtois B, Schaftleitner R, El Malki R, Brunel D and McNally K (2008). Allelic diversity of candidate genes for drought tolerance in a rice reference collection. Poster presented at  the 4th European Plant Science Organisation (EPSO) Conference, 22-26 June 2008, Toulon, France. 

Tignegre JB, Melis R, Tongoona P, Laing M, Ouedraogo JT, Drabo I, Ilboudo D, Neya BJ, Ba NM, Diasso GA, Satoru M, Boukar O, Moutari N and Mamadou T (2008). A challenge to integrating farmer’s preferences to a marker assisted selection as a strategy in breeding adapted cowpea for Striga resistance in cowpea. Poster presented at GCP Annual Research Meeting, 16-20 September 2008, Bangkok, Thailand. PDF  Abstract p 46 in 2008 Poster abstracts

Tovar C, Hyman G, and Wood S (2008). From attractiveness to feasibility: assessing national capacity to adapt, deliver, and adopt GCP technologies. Poster presented at GCP Annual Research Meeting, 16-20 September 2008, Bangkok, Thailand. Poster  Abstract p. 70 in 2008 Abstracts

Upadhyaya, HD, Bharathi A, Gowda CLL, Varshney RK and Dwivedi SL. (2008). Phenotyping reference set of foxtail millet [Setaria italica L.. Beauv] for agronomic traits. Poster presented at GCP Annual Research Meeting 16- 20th September 2008, Bangkok, Thailand. PDF  Abstract p 11 in 2008 Poster abstracts

Upadhyaya, HD, Bharathi A, Gowda CLL, Veerbadhran P, Dwivedi SL and Varshney RK (2008). Phenotyping reference set of finger millet [Eleusine coracana L. Gaertn] for agronomic traits. Poster presented at GCP Annual Research Meeting 16- 20th September 2008, Bangkok, Thailand. PDF  Abstract p 10 in 2008 Poster abstracts 

Upadhyaya, HD, Lalitha N, Varshney RK, Sharma HC,  Kashiwagi J, Gowda CLL, and Dwivedi SL (2008). Phenotyping reference set of chickpea (Cicer arietinum) for agronomic traits including resistance to legume pod border (Helicoverpa armigera). PDF Abstract p 9 in 2008 Poster abstracts 

Vadez V, P Ratna Kumar, L Krishnamurthy, Shridar Rao, Kiran K Sharma, and Pooja Bhatnagar-Mathur). A lysimetric system to simultaneously measure T, TE and HI in peanut (Arachis hypogeae L.). Poster presented at GCP Annual Research Meeting, 16─20 September 2008, Bangkok, Thailand.
Poster PDF 
Abstract p 47 in 2008 Poster abstracts

Varshney RK, Mahendar T, Aruna R, Nigam SN, Neelima K, Vadez V and Hoisington DA (2008). Extraordinary high allelic diversity in a groundnut (Arachis hypogaea L.) germplasm collection assayed by robust and informative SSR markers for crop improvement. Plant Breeding. Poster presented at Advances in Arachis Genomics conference, 4-8 November, ICRISAT, India.  (PDF not available).

Varshney RK, Bertioli DJ, Moretzsohn MC, Ravi K, Vadez V, Krishnamurthy L, Aruna R, Nigam SN, Moss BJ, Kannan S, He G, Knapp SJ and Hoisington DA (2008). SSR-based genetic linkage map for cultivated groundnut (Arachis hypogaea L.) for QTL analysis and comparative mapping. Poster presented at Advances in Arachis Genomics conference, 4-8 November, ICRISAT, India.  (PDF not available).


Vera Cruz CM, Gomez H, Wu J, Chen J, Asante MD, Manonmani S, Reveche MYV, Punongbayan AS (2008). Provision of Genotyping Support Services (GSS): An IRRI perspective.  Poster presented at the 2008 GCP Annual Research Meeting, 16–20 September 2008, Bangkok, Thailand. PDF

Vieira LJ, Alves AAC, Daltro PS, Santos VJ and Vilarinhos CA (2008). Diversidade genética entre variedades de mandioca contrastantes para a tolerância à seca. Poster presented at II Simpósio Brasileiro de Recursos Genéticos, 25-28 Novembro 2008, Brasília, Brasil. PDF
SBRG2008_Poster_Livia-DiversidadeSSR.pdf

Vidal M, Fernandes L, Tavares Filho L, Santos-Serejo J, Alves A (2008). Preliminary studies on pollen production and viability in wild relatives and cultivated cassava. Poster presented at the First Scientific Meeting of the Global Cassava Partnership (GCP-I), 21-25 July 2008, Ghent, Belgium.  PDF

Waddington SR, Dixon J, Li X, Hyman G and de Vicente MC (2008). Assessing production constraints and opportunities for GCP priority food crops and farming systems. Poster presented at GCP Annual Research Meeting, 16─20 September 2008, Bangkok, Thailand. PDF

Walsh E, Longfellow J, Chung CL, and Nelson R (2008). How do disease resistance QTLs affect the development of northern leaf blight in maize? Poster presented at the 50th Maize Genetics Conference, 27 February–2 March 2008, Washington DC, USA. PDF

Wisser R, Nelson R,  Kolkman J, Walsh E, Smith M, Yang J and Balint-Kurti P (2008). Multiple disease resistance in maize. Poster presented at the 50th Annual Maize Genetics Conference, 27 February–2 March 2008, Washington DC, USA. PDF

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2007
Akinbo OA, Labuschagne MT and Fregene MA (2007). Introgression of resistance to cassava green mite and high root protein from accessions of Manihot esculenta sub spp fabellifolia into cassava. Poster presented at Plant and Animal Genome XV Conference, 13–17 January, San Diego, California, USA Abstract no P152.  PDF


Alves AAC, Dita MA, Silva AF, Fregene MA, Duque LO and Setter TL (2007). Evaluation of drought tolerance contrasting cassava varieties under semi-arid environment. Poster presented at Paper presented at GCP Annual Research Meeting, 12–16 September 2007, Benoni, South Africa.
Poster   Abstract (p 66)


Alves AAC, Farias ARN, Dita MA, Silva AF, Bellotti AC and Fregene MA (2007). Evaluation of cassava interspecific hybrids for resistance to pests and diseases in different environments of Brazil. Poster presented at GCP Annual Research Meeting, 12–16 September 2007, Benoni, South Africa.
Poster  Abstract (p 67)


Azhar M and Heslop-Harrison JS (2007). DNA and genome diversity in bananas and plantains (Musa). Poster presented at 6th European Cytogenetics Conference, Istanbul, 7–10 July 2007, Istanbul, Turkey.  PDF


Bakry F, Baurens FC, Heslop-Harrison JS, Hippolyte I, Matsumoto M, Miller RG, Rouard M, Roux N, Sidibe-Bocs S, Souza M and Sasaki T (2007). Targeted Musa genome sequencing and frame map construction. Poster presented at GCP Annual Research Meeting, 12–16 September 2007, Benoni, South Africa.
Poster  Abstract (p 38)

 
Balint-Kurti P, Johal G, Kolkman J, Nelson R, Wisser R, Zwonitzer J and Rhyne D (2007). Analysis of quantitative resistance to foliar diseases of maize and evidence for multiple disease resistance loci. Poster presented at 49th Maize Genetics Conference, March 22–25, 2007, St. Charles, Illinois, USA.  PDF


Baurens FC, Miller RG, Lescot M, Rouard M, Pappas G, Matsumoto T, Roux N, Sasaki T, Sidibe Bocs S and D’Hont A (2007). Comparative genomics of Musa and rice genomes insight into an RGA cluster. Poster presented at Plant Genomics European Meeting, October, 3–6, Tenerife, Spain.  PDF


Bennett J, Dolferus R, Chandra Babu R, Shobbar ZS and Oane R (2007). Identifying genes responsible for failure of grain formation in rice and wheat under drought (SP2-1). Poster presented at GCP Annual Research Meeting, 12–16 September 2007, Benoni, South Africa.
Abstract (p 43)

Bennett J, Ishitani M, Vadez V and Reynolds M (2007). Evaluation and deployment of transgenic drought-tolerant varieties (SP3-19). Poster presented at GCP Annual Research Meeting, 12–16 September 2007, Benoni, South Africa.
Poster
Abstract (p 69).

Bruce M, Bai J, Hess A, Zhu T, Coughlan S, Bordeos A, Wang GL, Leung H, Leach JE (2007). Microarrays as a tool to indentify untagged deletions in rice. Poster presented at Plant and Animal Genome XV Conference, 13-17 January 2007, San Diego, California, USA.   Abstract

Bruce M, Coughlan A, Zhu T, Bordeos A, Wu CJ, Wang G, Leung H and Leach JE (2007). Microarrays as a tool to identify untagged deletions in rice. Poster presented at Plant and Animal Genome XV Conference, 13–17 January, San Diego, California, California, USA. Abstract no P60. Poster  Abstract

Cairns JE, Impa S, Liu DC, Mabesa R, Dimaguya G and Serraj R (2007). Deciphering the genetic and environmental interaction of leaf expansion under drought in rice (Oryza sativa L), Poster presented at GCP Annual Research Meeting, 12–16 September, Benoni, South Africa.   Abstract (p 32)

Cairns JE, Liu DC, Dimayuga G, Mabesa R, Torres R and Serraj R (2007). The genetic control of tissue growth in rice under water-limited conditions. Poster presented in: From genomics to plant improvement  proceedings of 2nd International Conference on Plant Molecular Breeding, 23–27 March 2007, Sanya, Hainan, China, (Li ZK and Fang XJ eds), p 98.

Cairns JE, Liu DC, Mabesa R and Serraj R (2007). Deciphering the genetic and environmental control of leaf expansion under drought in rice (Oryza sativa). Poster presented at 8th African Crop Science Society Conference, 27–31 October, El-Minia, Egypt.

Carrillo G, Goodwin PH, Reveche M, Leach JE, Leung H and Vera Cruz CM. (2007). Defense response genes contributing to race non-specific resistance to blast in rainfed upland rice. Poster presented at 4th International Rice Blast Conference, 10–13 October 2007, Hunan, China.
 
Carrillo G, Goodwin P, Reveche M, Leach J, Leung H and Vera Cruz C (2007). Molecular evolution of rice oxalate oxidases - candidate genes for quantitative resistance to rice blast. Poster presented at 4th International Rice Blast Conference, 10–13 October 2007, Hunan, China.  PDF

Carrillo G, Reveche M, Goodwin PH, Leach J, Leung H and Vera Cruz C (2007). Phylogenomic analyses of rice oxalate oxidases, candidate genes for quantitative resistance to rice blast. Poster presented at Annual Meeting of the American Phytopathological Society, 28 July–1 August 2007, San Diego, California, USA. PDF


Chenu K, Chapman S, Hammer GL, McLean G, Fournier C and Tardieu F (2007). Scaling up to whole-plant and crop levels short-term responses of leaf growth to water deficit. Poster presented at 5th International Workshop on Functional Structural Plant Models, 4–9 November, Napier, New Zealand. 

Chenu K, Chapman S, Hammer GL, McLean G and Tardieu F (2007). Translating short-term environmental effects on leaf growth rate into differences in whole-plant profiles of maize leaf area: impact of temperature, evaporative demand and soil water status. Poster presented at Workshop on growth phenotyping and imaging in plants, 17–19 July, Montpellier, France. PDF

Chin JH1, Lu X1, Peñarubia M, Aldemita V, Chua T, Haefele S, Ismail AM, Wissuwa M and Heuer S (2007). Phosphorus deficiency tolerance in rice: Development of molecular markers and a phenotyping system for Pup1, a major QTL for phosphorus deficiency tolerance. Poster presentation at the 5th International Symposium of Rice Functional Genomics, October 15-17, Tsukuba, Japan. PDF


Choumane W, Valkoun J, Grando S and Baum M (2007). Completing genotyping of a composite germplasm set of barley. Poster presented at the GCP Annual Research Meeting, 12–16 September 2007, Benoni, South Africa.
Abstract (p 10)

Chung CC and Nelson RJ (2007). Targeted discovery and characterization of quantitative trait loci (QTL) for resistance to northern leaf blight and other foliar fungal diseases in maize. Poster presented at the 49th Annual Maize Genetics Conference, 22–25 March 2007, St. Charles, Illinois. PDF

Conte M, Gaillard S, Lanau N, Rouard M and Périn C (2007) GreenPhylDB: a database for plant comparative genomics. Poster presented at 18th International Conference on Arabidopsis Research (ICAR), June 20–23, Beijing, China.  PDF

Conte M, Gaillard S, Lanau N, Rouard M and Périn C (2007) GreenPhylDB: a database for plant comparative genomics. Poster presented at 5th International Symposium of Rice Functional Genomics (ISRFG), 15–17 October, Tsukuba, Japan. PDF

Davidson R, Manosalva P, Snelling J, Vera Cruz C, Leung H and Leach JE (2007). The rice chromosome 8 OsGLP gene cluster contributes to QTL-governed disease resistance. Poster presented at 5th International Symposium of Rice Functional Genomics, 16 October 2007, Tskuba, Japan.

De Ocampo MP, Thomson MJ, Egdane J, Katimbang MB, Zantua RE, Rahman MA, Ismail AM (2007). Graphical genotyping of salt-tolerant lines of rice and comparison of allelic variation in different Pokkali accessions. The 19thFederation of Crop Science Societies of the Philippines, 13-15 June 2007, Tagaytay City, Philippines. PDF


Dita MA and Alves AA (2007). Incidência e severidade de doenças em espécies silvestres de mandioca (Manihot esculenta Crantz). Poster presented at XL Annual Meeting of the Brazilian Phytopathological Society, 13–17 September 2007, Maringa, Parana, Brazil. PDF


Djedatin G, Lorieux MT, Ghesquière A, Ndjiondjop MN, Verdier V (2007). Identification of resistance sources and mapping of resistance QTLs to African strains of Xanthomonas oryzae pv oryzae causing bacterial leaf blight in rice. Poster presented at GCP Annual Research Meeting, 12–16 September 2007, Benoni, South Africa.
Poster   Abstract (p 63)


Doi K, Hosaka A, Nagata T, Satoh K, Suzuki K, Mauleon R, Mendoza MJ, Bruskiewich R and Kikuchi S (2007). The development of a novel data mining tool to find cis-elements in rice gene promoter regions. Poster presented at International Symposium on Rice Functional Genomics, 15–17 October 2007, Tsukuba, Ibaraki, Japan. PDF

Dolezel J, Hippolyte I, Jenny C, Rouard M and Roux N (2007). Supporting distribution of reference germplasm (Musa). Poster presented at GCP Annual Research Meeting, 12–16 September 2007, Benoni, South Africa.
Poster   Abstract (p 19)


Dreisigacker S, Taba S, Bedoya C, Franco J, Charcosset A, Mir C, Zhang S, Xie C, Prasanna BM, Hearne S, Muthamia Z, Yunus M, Jampatong C, Cuong BM and Warburton ML (2007). Molecular characterization of maize landraces and various subspecies of teosinte from Mexico and Central America. Poster presented at GCP Annual Research Meeting, 12–16 September 2007, Benoni, South Africa.
Abstract (p 13)

Dreisigacker S, Taba S, Bedoya, C, Franco J, Charcosset A, Mir C, Zhang S, Xie C, Prasanna BM, Hearne S, Muthamia Z, Yunus M, Jampatong C, Cuong BM and Warburton ML (2007). Molecular characterization of maize landraces and various subspecies of teosinte from Mexico and Central America. Poster presented at 52nd Annual Meeting, Crop Science Society of America, 4–8 November 2007, New Orleans, Louisiana, USA.

Dreisigacker S, Zaharieva M, Balfourier F, Miloudi N, Zhang X and Warburton M (2007). Exploiting genetic diversity among unadapted wheat landraces from different geographical origins revealed by SSRs. Poster presented at GCP Annual Research Meeting, 12–16 September 2007, Benoni, South Africa. Abstract (p 14)


Dreisigacker S, Zaharieva M, Balfourier F, Miloudi N, Zhang X and Warburton M (2007). Exploiting genetic diversity among unadapted wheat landraces from different geographical origins revealed by SSRs. Poster presented at 52nd Annual Meeting, Crop Science Society of America, 4–8 November 2007, New Orleans, Louisiana.

Egesi C, Cuambe C, Rosero A, Sanchez T, Morante N, Ceballos H and Fregene M (2007). Genetic mapping of delayed post-harvest physiological deterioration in cassava in backcross derivatives of Manihot walkerae. Poster presented at Plant and Animal Genome XV Conference, 13–17 January 2007, San Diego, California, USA. Abstract no P673.  PDF


Egesi CN, Okogbenin E, Shuaibu K, Eke-Okoro ON, Mbanaso ENA, Njoku D, Ogundapo O, Ekwelum E, Baiyeri S, Gomez H and Fregene M (2007). Marker-aided cassava germplasm improvement in Nigeria: partnerships that strengthen capacity for food security. Poster presented at the GCP Annual Research Meeting, 12–16 September 2007, Benoni, South Africa.
Abstract (p 55)

Farias ARN, Bellotti AC, Fregene M, Silva AF and Alves AAC (2007). Avaliação de híbridos interespecíficos de mandioca para resistência a artrópodes-praga em condições semi-áridas (Evaluation of cassava interspecific hybrids for pests resistance in semi-arid conditions). Poster presented at XII Brazilian Cassava Congress of the Brazilian Cassava Society, 23–26 October 2007, Paranavaí, Parana, Brazil. PDF

Ferguson ME, Kiambi D, Kawuki R, Salih S, Hash T and Hoisington D (2007). Tapping crop diversity for the resource poor in Eastern, Central and Southern Africa. Poster presented at Third General Meeting on Biotechnology, Breeding and Seed Systems for African Crops, 26–29 March 2007, Joaquim Chissano International Conference Centre, Maputo, Mozambique. PDF

Generation Challenge Programme (2007). Annual Research Meeting Poster Abstracts. Generation Challenge Programme, Mexico DF, Mexico, pp 1–90.  PDF

Hazekamp T and Davenport G (2007). Generation Challenge Programme: making data accessible. Poster presented at GCP Annual Research Meeting, 12–16 September 2007, Benoni, South Africa. Poster  
Abstract (p 77)

Hazekamp T, Davenport G, Gaiji S, Sood R and Skofic M (2007). Management of the GenerationCP Central Registry. Poster presented at GCP Annual Research Meeting, 12–16 September 2007, Benoni, South Africa.
Poster   Abstract (p 76)

Heuer S, Lu X, Chin JH, De Leon T, Ulat VJ, Yano M, Ismail AM and Wissuwa M (2007). Comparative genomic analysis and assessment of candidate genes at the Pup1 locus, a major QTL for phosphorus deficiency tolerance in rice. Poster presented at GCP Annual Research Meeting, 12–16 September 2007, Benoni, South Africa.
Poster  Abstract (p 43)

Heuer S, Lu X, Chin JH, De Leon T, Ulat VJ, Yano M, Ismail AM, Wissuwa M (2007). Comparative genomic analysis and assessment of candidate genes in the Pup1 locus, a major QTL for phosphorus deficiency tolerance in rice. Poster presentation at the 5th International Symposium of Rice Functional Genomics, October 15-17, Tsukuba, Japan. PDF

Hippolyte I, Kolesnikova M, Perrier X, Rouard M and Roux N (2007). Genotyping of composite germplasm set, Tier 1, Musa. Poster presented at GCP Annual Research Meeting, Benoni, South Africa. Poster Abstract (p 20)

Hyman GS, Fujisaka S, Jones P, Wood S, de Vicente C and Dixon J (2007). Strategic approaches to targeting technology generation: assessing the coincidence of poverty and drought-prone crop production. Poster presentation at Annual Meeting of the Association of American Geographers, 17–21 April 2007, San Francisco, California, USA. PDF

Ismail AM, Thomson MJ, de Ocampo M, Egdane J, Katimbang M, Rahman MA, Blumwald E, Wilson C, Seraj Z, Close TJ, Singh RK and Gregorio G (2007). QTL mapping and marker-assisted backcrossing for improved salinity tolerance in rice. Poster presented at GCP Annual Research Meeting, 12–16 September 2007, Benoni, South Africa. Abstract p(68)


Jing R-L, Chang X-P, Mao X-G, Xie H-M and Sun M-R (2007). Marker-assisted selection of genes associated with drought tolerance in wheat. Poster presented at GCP Annual Research Meeting, 12–16 September 2007, Benoni, South Africa.
Poster   Abstract (p 51)

Katimbang MB, McNally R, Thomson MJ, Egdane J, Ismail AM (2007). Carbon isotope discrimination screening of salinity tolerance at the seedling and reproductive stage in rice. The 19thFederation of Crop Science Societies of the Philippines, 13-15 June 2007, Tagaytay City, Philippines. PDF

Kochian LV, Magalhaes JV, Liu J, Hoekenga OA, Guimaraes C, Alves V, Maron L, Lana U, Shaff J, Lyi M, Pineros M and Schaffert R (2007) Elucidating the molecular determinants of aluminum tolerance in sorghum and maize. Poster presented at Challenge Program Symposium: Unlocking Crop Genetic Diversity for the Poor Workshop, at Plant and Animal Genome XV Meeting, 13–17 January 2007, San Diego, California, USA. Abstract no P369.  PDF


Kumar A, Bernier J, Venuprasad R, Serraj R, Anitha R, Verulkar SB, Shashidhar HE, Hittalmani S, Mandal NP, Sinha PK, Dwivedi JL, Swain P, Singh ON, Bose L, Robin S, Chandrababu R and Atlin G (2007). Developing and disseminating resilient and productive rice varieties for drought-prone environments in India: a network approach. Poster presented at GCP Annual Research Meeting, 12–16 September, Benoni, South Africa. Abstract (p 84)


Kumar A, Venuprasad R, Bernier J, Mackill, D, Serraj R, Perraju, P, Shashidhar HE, Hittalmani S, Mandal NP, Sinha PK, Dwivedi JL, Swain P, Singh ON, Bose L, Robin S, Chandrababu R, Tao D, Spaner D and Atlin G (2007). Detecting and fine-mapping QTLs with major effects on rice yield under drought stress for deployment via marker-aided breeding. Poster presented at GCP Annual Research Meeting, 12–16 September 2007 Benoni, South Africa. Abstract (p 83)

Lorieux M, Verdier V and Ghesquiere A, (2007) Integration of genomic tools with conventional screening for developing NERICA rice cultivars for West Africa. Poster presented at the 2007 GCP Annual Research Meeting, 12-16 September, Benoni, South Africa -  PDF

Lu X, Chin JH, De Leon T, Yano M, Ismail AM, Wissuwa M, Heuer S (2007). Comparative genomic analysis and assessment of candidate genes in the Pup1 locus, a major QTL for phosphorus deficiency tolerance in rice. Poster presentation at the 5th International Symposium of Rice Functional Genomics, October 15-17, Tsukuba, Japan.

Mabesa R, Cairns JE and Serraj R (2007). Response of rice leaf expansion to water deficits, temperature and vapour deficit pressure in different rice genotypes. Poster presented at 19th Conference of the Federation of Crop Science Societies of The Philippines (FCSSP), 13–15 June 2007, Tagaytay City, The Philippines.


Muranaka S, Timko MP, Cisse N, Wade M, Fatokun C, Raji A, Kim DJ and Boukar O (2007). Marker development and marker-assisted selection for Striga resistance in cowpea. Poster presented at GCP Annual Research Meeting, 12–16 September 2007, Benoni, South Africa.
PDF  Abstract (p 59)


Naredo MEB, Gamalinda MB, Atienza GA, Melgar RJA, Sanciangco MD, Raghavan C, Cairns J, Lafitte R, Atlin G, Kumar A, Serraj R and McNally KL (2007). Agarose-Based ecotilling as a tool for targeted genotyping in Oryza species. Poster presented at 5th International Symposium of Rice Functional genomics, 15–17 October 2007, Tsukuba, Japan. PDF


Nayak S, Kashiwagi J, Gudipati S, Juvadi P, Jayashree B, Gaur PM, Upadhyaya HD, Chandra S, This D, Hoisington D and Varshney RK. (2007). Genomics-based approaches for enhancing molecular breeding strategies for drought tolerance in chickpea (Cicer arietinum L.). Poster presentation at the Sixth European Grain Legume Genomics Conference), Lisbon, Portugal, 12-16 November 2007. 

Ndjiondjop MN, Manneh B, Fousseyni C, Sanchez I, Drame KN, Bocco R, Cissoko M, De Souza F, Lorieux M, Verdier V and Ghesquiere A, (2007) Integration of genomic tools with conventional screening for developing NERICA rice cultivars for West Africa. Poster presented at GCP Annual Research Meeting, 12–16 September 2007, Benoni, South Africa.
Poster

Abstract (p 37)

Noronha ACS, Boaventura VJ and Alves AAC (2007). Aspectos biológicos de Mononychellus tanajoa (bondar) (Acari, Tetranychidae) em espécies silvestres de Manihot (Biological aspects of Mononychellus tanajoa (bondar) (Acari, Tetranychidae) in wild species of Manihot). Poster presented at XII Brazilian Cassava Congress of the Brazilian Cassava Society, 23–26 October 2007, Paranavaí, Parana, Brazil. PDF


Norton GW, Alpuerto V and Rudi N (2007). Ex ante impact assessment of marker-assisted selection technologies. Poster presented at GCP Annual Research Meeting, 12–16 September 2007, Benoni, South Africa.
Poster   Abstract (p 85)


Okogbenin E, Egesi C, Okai E, Mba C, Espinosa E, Guillermo Santos C, Ospina C, Marin J, Barera E, Gutierrez J, Mbanaso E, Gomez H and Fregene M (2007). Marker-assisted selection: a paradigm for germplasm transfer and genetic improvement of cassava in Africa. Poster presented at GCP Annual Research Meeting, 12–16 September 2007, Benoni, South Africa. Abstract (p 70)

Oña I, Castro S, Tagle A, Ardales E, Goodwin P, Han SS, Roh JH and Vera Cruz CM (2007). Population shift in Magnaporthe oryzae at screening sites in The Philippines. Poster presented at 4th International Rice Blast Conference, 9–13 October 2007, Changsha, China.

Oppong A, Warburton M, Ewool R, Thompson M, Asante and Poku-Sekyere K (2007). Characterization of maize germplasm found in Ghana, using the bulking technique. Poster presented at GCP Annual Research Meeting, 12–16 September 2007, Benoni, South Africa. Abstract (p 79).

Park CH, Jung KH, Phetsom J, Babu MR, Bruce M, Mauleon R, Bordeos A, Bellizzi M, Leach J, Leung H, Ronald P and Wang GL (2007). Characterization of rice defense mutants using whole genome expression profiling. Poster presented at Plant and Animal Genome XV Conference, 13–17 January 2007, San Diego, Calilfornia, USA. Abstract no P740. Abstract


Reveche MYV, Das A, Mercado EFL, Carrillo MGC, Oña I P, Begum SN, Lopena V, Capilit GS, Virk P and Vera Cruz CM (2007). Confirmation of Xa genes introgressed into elite basmati derived lines. Poster presented at 2nd International Bacterial Blight Conference, 1–4 October 2007, Nanjing, China. PDF

Satoh K, Doi K, Nagata T, Hosaka A, Suzuki K, Ji X, Raveendran M, Mauleon R, Bennett J, Leung H, Bruskiewich R and Kikuchi S (2007). Gene expression analysis and data mining for the gene network analysis derived from drought stress treatments in rice. Poster presented at Plant and Animal Genome XV Conference, 13–17 January 2007, San Diego, California, USA. Abstract no P742.
Poster   Abstract

Sidibe Bocs S, Pappas G, Rouard M, Legeai F, Droc G, Jouffe V, Garsmeur O, Cardi C, D’Hont A, Matsumoto T, Miller RN and Baurens FC (2007). Comparison of hom(oe)ologous regions containing RGAs within Musa species and with rice. Poster presented at 15th Annual International Conference on Intelligent Systems in Molecular Biology (ISMB), 21–25 August 2007, Vienna, Austria.

This D, Courtois B, Billot C, Philiipe R, Rami JF, Bonierbal M, Simon R, Schaftleitner R, Hoisington D, Varshney R, Nayak S, Jayashree B, Brunel D, Mournet P, McNally K, Baum M, Choumane W, Hash T, Blair M, Upadhyaya H, Fregene M 2007. Progress in orthologous candidate gene diversity assessment. Poster presentation at the at the Annual research meeting of the Generation Challenge Programme, 12-16 September 2007, Benoni, South Africa.

Thomson MJ, de Ocampo M, Egdane J, Katimbang M, Rahman MA, Singh RK, Gregorio GB and Ismail AM (2007). QTL mapping and marker-assisted backcrossing for improved salinity tolerance in rice. Poster presented at Plant and Animal Genome XV Conference, 13–17 January 2007, San Diego, California, USA. Abstract no 248.

Poster  Abstract

Tonessia DC, Wade M, Cissé N, Timko MP and N’Diaye A (2007). Genetic structure and analysis of Striga gesnerioides (Witchweed) from Senegal. Poster presented at International conference on the bioinformatics of African pathogens and disease vectors, hosted by International Centre of Insect Physiology (ICIPE) and Biosciences Eastern and Central Africa (BeCA), 22–28 June 2007, Nairobi, Kenya

Upadhyaya, HD, Dwivedi SL, Bhattacharjee R, Udupa SM, Varshney RK, Furman BJ, Baum M, Gowda CLL, Kashiwagi J, Vadez V, Krishnamurthy L, Prasanth VP, Hoisington DA, Chandra S and Singh S (2007). Mining allelic diversity associated with drought and salinity tolerance in reference subset of chickpea germplasm collections. Poster presented at GCP Annual Research Meeting, 12–16 September 2007, Benoni, South Africa.  Poster   Abstract (p 8)

Vadez V, Krishnamurthy L, Nigam SN, Upadhyaya HD, Hoisington D, Aruna R, Leal-Bertioli SCM and Bertioli DJ. 2007. Large variation in gravimetric TE exists in wild and cultivated groundnut germplasm. Presented in Generation Challenge Programme Annual Review Meeting. South Africa, 12-16 Sept 2007. 

Vadez V, Rao S, Devi JM, Bhatnagar-Mathur P, Sharma KK 2007. DREB1A promotes root growth and enhances water uptake under water stress in groundnut. Presented in Generation Challenge Programme Annual Review Meeting. South Africa, 12-16 Sept 2007.

Varghese N, Reddy PS, Nayak S, Lekha P, Jayashree B, Gaur Pm, Hoisington DA, Varshney RK, Penmetsa RV, Sarma B, Carrasquilla Garcia N, Steiner S, Cook DR, Horres R, Winter P, Srinivasan P, Crespi M, Kahl G and Oliver R. (2007).  Development of genomic resources in chickpea (Cicer arietinum L.). Poster presentation at the Sixth European Grain Legume Genomics Conference, 12-16 November 2007, Lisbon, Portugal.


Vera Cruz CM, Carrillo G, Oña I, Variar M, Bustamam M, Trijatmiko R, Cairns J, Mauleon R, Courtois B, Javier E, Leach JE, Lafitte R, Serraj R, Nelson RJ and Leung H (2007). Stacking disease QTLs with drought tolerance in rice. Poster presented at GCP Annual Research Meeting, 12–16 September 2007, Benoni, South Africa. Poster  Abstract (p 71)


Vera Cruz CM, Reveche MYV, Mercado EFL, Chen J, Collard B, Chin JH, Skinner DJ, Carrillo MGC, Wu J, Xu Y, Bernardo M, Bustamam M, Agarcio J, Verdier V, Sanchez DL, Joshi D, William M, Ulat VJ, Metz T, Bruskiewich R, Crouch J and Mackill DJ (2007). Accelerating varietal development using high throughput, low cost, gene-based MAS technologies in cereals. Poster presented at GCP Annual Research Meeting, 12–16 September 2007, Benoni, South Africa.
Poster   Abstract (p 53)


Wanchana S, Mauleon R, Ulat VJM, Cosico A, Anacleto M, Echavez M, Manansala K, Yap JM, Gregorio S, Senger M, McLaren G and Bruskiewich R (2007). Querying Generation CP domain model structured data on the WWW: the Koios Search Engine. Poster presented at Plant and Animal Genome XV Conference, 13–17 January 2007, San Diego, California, USA.
PowerPoint presentation

Yaa Parkes E, Quain M, Agyei JA, Moses E, Mensah GA, Okogbenin E, Egesi C, Bellotti A and Fregene M (2007). Using molecular breeding to fast track release of delayed PPD and disease resistant cassava in Ghana. Poster presented at GCP Annual Research Meeting, 12–16 September 2007, Benoni, South Africa. Abstract (p 64)


Zaharieva M, Warburton M, Dreisigacker S and Payne T (2007). Improvement of wheat relative’s documentation for a more efficient use in breeding. Poster presented at GCP Annual Research Meeting, 12–16 September 2007, Benoni, South Africa. PDF
Abstract (p 15)

Zwonitzer J and Balint-Kurti P (2007). Near-isogenic lines for the genetic dissection of quantitative resistance to southern leaf blight and grey leaf spot in maize. Poster presented at 49th Maize Genetics Conference, 22–25 March 2007, St Charles, Illinois, USA. PDF


Zwonitzer J*, Chung CL*, Longfellow J, Nelson R and Balint-Kurti P (2007). Near-isogenic lines for maize disease resistance QTL. Poster presented at GCP Annual Research Meeting, 12–16 September 2007, Benoni, South Africa (* Joint first authors)--Poster winner. Poster
Abstract (p 36)


«back to Posters»
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Banu SP, Miah B, Ali A, Brar D, and Vera Cruz CM (2006). New sources identified for resistance to brown spot disease in rice. Poster presented at the International Rice Congress, October 2006, New Delhi, India. - PDF

Bennett J, Ishitani M, Vadez V (2006). Evaluation and deployment of transgenic drought-tolerant varieties (SP3-19). Poster presented at the 2005 GCP Annual Research Meeting 29 September - 1 October 2005, Rome, Italy.

Bennett J, Ishitani M, Vadez V, Reynolds M (2006). Evaluation and deployment of transgenic drought-tolerant varieties (SP3-19). Poster presented at the 2006 GCP Annual Research Meeting, 12-16 September 2006, Sao Paulo, Brazil.

Bennett J, Shobbar ZS, Raveendran M, Ji XM (2006). Identifying Genes Responsible for Failure of Grain Formation in Rice and Wheat under Drought (SP2-1). Poster presented at the 2006 GCP Annual Research Meeting, 12-16 September 2006, Sao Paulo, Brazil.

Billot C, Deu M , Rami J-F Rivallan, Hash CT, Ramu P, Folkertsma RT, Bantte K, Upadhyaya HD, Li Y, Fonceka D (2006). Insight into genetic diversity analysis of sorghum biocolor- use of SSR markers. Poster presented in the 2006 GCP Annual Research Meeting, 12-16 September 2006, Sao Paulo, Brazil - PDF

Bruskiewich R, Davenport G, Hazekamp T, Metz T, Ruiz M, Simon R, Takeya M, Lee J, Senger M, and McLaren G (2006). Development and Application of Generation Challenge Programme Domain Models, Plant & Animal Genome XIV Conference, 14–18 January 2006, San Diego, California, USA - Abstract   Full Poster (PDF)

Carrillo G, Ona I, Lestari P, Qui F, Goodwin P, Variar M, Bustamam M, Leach J, Nelson R, Leung H, Vera Cruz C (2006). QTLs meet genomics: targeting superior disease QTL alleles in the rice genome. Poster presented at the 2006 GCP-Annual Research Meeting, 12-16 September 2006, Sao Paolo, Brazil. - PDF

Choumane W, Zhag J, Valkoun J, Hang C, Baum M  (2006). Assessment of genetic Diversity in a composite germplasm set of barley and the development of a core collection.  Presented at the 2006 GCP Annual Research Meeting, 12-16 September, Sao Paulo, Brazil.

Conte M, Gaillard S, Périn C (2006). GREENPHYL: An optimized phylogenomic pipeline for Ortholog prediction between two model plant species Arabidopsis thaliana and Oryza sativa. 14th Annual International Conference on Intelligent Systems in Molecular Biology (ISMB), 6-10 August, Fortaleza, Brazil – PDF

Crossa Franco JJ, Dreisigacker S, Li Yu, Menkir A, Hearne S, Mahalakshmi V,. Charcosset A, and Warburton M (2006). Developing a Useful Subset of the Maize GCP Composite Genotype Set.  GCP Annual Research Meeting 2006, 12-16 September 2006, Sao Paulo, Brazil.

Doi K, Nagata T, Satoh K, Suzuki K, Iizumi S, Kimura S, Hosaka A, Kikuchi S (2006). Analysis of relationship between upstream element of genes and expression data profile from microarray analysis: An attempt to find cis-elements by combining method of motif searching and data mining. The 8th International Congress of Plant Molecular Biology, 20-25 August 2006, Adelaide, Australia - PDF

Doi K, Nagata T, Satoh K, Suzuki K, Iizumi S, Kimura S, Hosaka A, Kikuchi S (2006). Development of a data mining tool to find cis-elements concerning in gene expression detectable by microarray analysis. 20th IUBMB International Congress of biochemistry and molecular biology and 11th FAOBMB Congress, 18-23 July 2006, Kyoto, Japan -  PDF

Dreisigacker S, Kishii M, Lage J, and Warburton M (2006).  Use of synthetic hexaploid wheat to increase diversity for CIMMYT bread wheat improvement.  1st Synthetic Wheat Symposium, Brisbane, Australia.

Egesi C, Okogbenin E, Ekpe E, Uyovbisere E, Oselebe H, Aduramigba-Modupe V,  Osunde A, Fregene M (2006). A partnership with improved cassava germplasm comes to the aid of poor farmers in Nigeria. Poster presented at CGIAR Annual Research Meetimg, 3-5 December 2006, Innovationa Marketplace, Washington D.C, USA

Egesi C, Sanchez T, Morante N, Ospina C, Ceballos H and Fregene M (2006). Identification of delayed PPD in an inter-specific hybrid of cassava and a wild relative Manihot walkerae. Poster presented at the 2006 GCP Annual Research Meeting, 12-16 September 2006, Sao Paulo, Brazil.

Ferguson M, Dumet D, Hurtado P, Duque MC, Mkumbira J, and Fregene M (2006). Cassava Reference Set Selection and Preparation for Cassava Mapping. GCP SP1: 2006 (Commissioned Research Project. Poster presented at the 2006 GCP Annual Research Meeting, 12 - 16 September 2006, Sao Paulo, Brazil - PDF

Furman BJ, Baum M, Hamwieh A, and Jung C (2006). Developmnet of a composite collection of lentil and its molecular characterisation. Presented at the 2006 GCP Annual Research Meeting, 12-16 September 2006, Sao Paulo, Brazil.

Furman BJ, Baum M, Hamwieh A, Suso MJ, and Duc G (2006). Development of a composite collection and the genotyping of a tier 2 (orphan) crop: Faba bean. Presented at the 2006 GCP Annual Research Meeting,  12-16 September 2006, Sao Paulo, Brazil.

Gatdula KA, Lu X, Yano M, Wissuwa M, Chua T, Ismail AM. Candidate genes in the Pup1 locus for tolerance to phosphorus deficiency. The 8th international Congress of Plant Molecular Biology, August 20-25, 2006, Adelaide, Australia. Abstract No. POS-TH-236. p 135

Hazekamp T, Bink M, Chandra S, Davenport G, Endresen D, Gaiji S, Simon R, Sood R and Skofic M (2006). Management of the GCP Central Registry, 2006 GCP Annual Research Meeting, 12-16 September 2006, Sao Paolo, Brazil. - PDF 

Heinemann AB, Dingkuhn M, Chapman SC, Luquet D, Combres JC, De Raissac M, and Lafarge T (2006). Determination of drought critical periods for upland rice in Brazilian savannahs. International Rice Research Congress, India October 2006 – PDF

Hoisington DA, Jayashree B, Ferguson M, and Hearne S, de Villiers E,  de Villiers S,  and Kiambi D (2006). Installation and implementation of ICRISAT LIMS at Biosciences Eastern and Central Africa (BecA) facility and IITA-Ibadan. SP4, Commissioned Resarch Project No. 1d 34. Poster presented at Generation Challenge Program Annual Research Meeting, Sao Paulo, Brazil, 12– 16 September 2006. - PDF 

Hoisington D, Ferguson M, Kiambi D, Hash T, de Villiers S, Kawuki R, and Salih S (2006). Tapping Crop Diversity for the Resource Poor in Eastern, Central and Southern Africa. GCP SP1: 2005 (Commissioned Research Project (2005-2008). Poster presented at the 2006 GCP Annual Research Meeting, Sao Paulo, Brazil. - PDF

Hurtado P, de Vicente C, and Fregene M (2006). Validation of Diversity Arrays Technology (DArT) as a Platform for Whole Genome Profiling in Orphan Crops. Poster presentation at the 2006 GCP Annual Research Meeting,   Annual General Meeting, 12-16 September 2006 Sao Paulo, Brazil.

Malosetti M, Mathews KL, Ribaut J-M, Reynolds MP, Crossa J, Chapman SC and van Eeuwijk FA (2006). Multi-environment (multi-trait) QTL mapping using mixed models. Applications to drought stress trials in maize and wheat. Presented at the 2006 GCP Annual Research Meeting, 12-16 September, 2006, São Paulo, Brazil submitted by van Eeuwijk FA – PDF

Manzano R, Macatangay M, Redondo M, Lacorte V, Zaidem M, Detras J, Barile M, Pabale D, Hamilton NRS, Benoit L, Rivallan R, Courtois B, Billot C, Garavito A, Lorieux M, Martinez CP, Borba T, Brondani RV, Brondani C, Cissoko M, Ndjiondjop MN, Famoso A, McCouch SR, Zhang YY, Han LZ, and McNally KL (2006). Population structure of the rice composite set. Poster presented at 9th National Genetics Symposium, 25-28 October 2006, Benguet State University, La Trinidad, Benguet, Philippines – PDF

Mercado EFL, Reveche MYV, Chen J, Skinner DJ, Carrillo MGC, Collard BCY, Bernardo M, William M, Xu Y, and Vera Cruz CM (2006). Development of gene-based marker technologies for high throughput genotyping. Poster presented at the 2006 GCP Annual Research Meeting, Sao Paolo, 12-16 September 2006, Brazil. - PDF

Metz T, Bruskiewich R, Mendoza MJ, Davenport G, Simon R (2006). GCP Software Engineering and Collaboration Platform. Poster presented in the Generation Challenge Program Annual Research Meeting, 12-16 September 2006, Sao Paulo, Brazil - PDF

Nakhoda B, Leung H, Egdane J, Ismail AM (2006).  Isolation and characterization of rice mutant lines with altered responses to salt stress. The 36th Crop Science Conference of the Philippines, 8-12 May 2006, Puerto Princesa City, Palawan, Philippines. PDF

Nakhoda B, Leung H, Egdane J, Ismail AM (2006).  Morphological, physiological and biochemical evaluation of IR64 mutant lines under saline and normal conditions. The 2nd International Rice Congress, 9-13 October 2006, New Delhi, India. PDF

Naredo MEB, Gamalinda MB, Atienza GA, Melgar RJA, and McNally KL (2006). EcoTILLING: a technique for detecting natural variation and a diagnostic tool for biosystematic studies in Oryza. Poster presented at 9th National Genetics Symposium, 25-28 October 2006, Benguet State University, La Trinidad, Benguet, Philippines –  PDF

Philippe R, Courtois B, Billot C, Rami JF, Brunel D, Mournet P, This D (2006). ADOC : allelic diversity of orthologous candidate genes for drought tolerance in crops : example of the ASR gene family. Poster presentation at Plant Gems, 18-21 october 2006,Venize, Italy.

Poland JA, Wisser RJ, Kresovich S, and Nelson RJ (2006). Recurrent Selection Mapping in Two Maize Populations Suggests that Some Common Loci are Associated with Northern Leaf Blight Selection.  Maize Genetics Conference, Pacific Grove, CA; March 9-12, 2006. - PDF

Poland JA, Wisser RJ, and Nelson RJ (2006). Selection Mapping in Two Maize Populations Improved for Northern Leaf Blight Resistance. International Plant Breeding Symposium, 20-25 August, 2006, Mexico City, Mexico. - PDF

Raghavan C, Liu B , Leach JE , Nelson RJ, McNally K, Leung H (2006). Application of a simple SNP detection method for mapping and association studies. Poster (abstract P186) presented at the Plant & Animal Genome XIV Conference, 14-18 January 2006, San Diego, CA, USA – PDF

Ramírez S, Dreisigacker S, Taba S, Charcosset A, Warburton M (2006).  Genetic Characterization of Maize Landraces from Central and South America.  GCP Annual Research Meeting 2006, 12-16 September 2006, Sao Paulo, Brazil,

Reveche MYV, Mercado EFL, Chen J, Collard BCY, Bernardo M, Skinner DJ, Wu J, Redoña E, Kadirvel P, Bustamam M, Verdier V, William M, Vera Cruz CM (2006). Development of non gel-based, high-throughput, and low-cost technologies for marker-assisted selection in rice. Poster presented during the 32nd Scientific Meeting of the Crop Science Society of the Philippines (CSSP), 8-12 May 2006 Palawan, Philippines-  PDF

Reveche  MYV, Mercado EFL, Skinner DJ, Carrillo  MGC, Collard BCY, William M, Xu Y, and Vera Cruz CM (2006). Dot blot assay technology: Low cost, non gel-based, high throughput technology for marker-assisted selection in cereals. Poster presented at the 2006 GCP Annual Research Meeting, 12-16 September, Sao Paolo, Brazil. - PDF

Simo H, von Korff M, Ghannam Z, Choumane W, Hamwieh A, Sayed H, Udupa S, Baum M, and Akintunde A (2006). ICARDA generation GLIMS and GeMS.  Presented at the 2006 GCP Annual Research Meeting, 12-16 September 2006, Sao Paulo, Brazil.

Singh M, Guo P, and Baum M (2006). Estimating Confidence Limits for Differential Expression OF Genes Based on Control Experiments. Presented at GCP, ARM 2006, Sao Paulo. submitted by M. BAUM – Report (PDF)   Poster (PDF)

This D, Courtois B, Billot C, Rami JF, Philippe R, Bonierbale M, Simon R, Schaftleitner R, Brunel D, Mournet P, McNally P, Baum M, Coumane W, Hash CT, Varshney RK, Hoisington D, Nayak S, Blair T, Upadyaya H, Fregene M, Bennet J, Ji X, Dingkuhn M, Masle J, Zivy M, Falque M, Setter T (2006). ADOC : allelic diversity of orthologous candidate genes. Poster presentation at the Annual research meeting of the Generation Challenge Program, 12-16 september 2006, Sao Paulo, Brasil.

Thomson MJ, Gregorio G, Singh RK, de Ocampo M, Egdane J, Katimbang M, Tumimbang E, Walia H, Blumwald E, Wilson C, Seraj Z, Close TJ, and Ismail AM (2006).  QTL Mapping, Candidate Gene Analysis, and Marker-assisted Backcrossing for Improved Salinity Tolerance in Rice.  Presented at the 2006 GCP Annual Research Meeting, 12-16 September 2006, Sao Paolo, Brazil. PDF

Upadhyaya HD, Bhattacharjee R, Hoisington DA, Chandra S, Varshney RK, Reddy KN, Saxena KB (2006). Molecular characterization of pigeonpea [Cajanus cajan (L.) Millspaugh] composite collection. Poster presented in the Generation Challenge Program Annual Research Meeting, 12-16 September 2006, Sao Paulo, Brazil - PDF

Upadhyaya HD, Bhattacharjee R, Hoisington DA, Chandra S, Varshney RK, Singh S, Valls JFS, Moretzsohn ,  MC, Leal-Bertioli S, Patricia Guimarăes, David Bertioli (2006). Molecular characterization of groundnut (Arachis hypogaea L.) composite collection. Poster presented in the Generation Challenge Program Annual Research Meeting, 12-16 September 2006, Sao Paulo, Brazil - PDF

Upadhyaya HD, Hash CT, Senthilvel S, Varshney RK, Hoisington DA, Rai KN, Reddy KN, Thakur RP, Chandra S (2006). Development of composite collection and genotyping of pearl millet  [Pennisetum glaucum (L.) R. Br.]. Poster presented in the Generation Challenge Program Annual Research Meeting, 12-16 September 2006, Sao Paulo, Brazil - PDF

Upadhyaya HD, Hoisington DA, Dwivedi SL, Baum M, Udupa SM, Furman BJ, Chandra S,  Eshwar K, Gowda CLL, Singh S,. Prasanth V (2006). Genotypic and Phenotypic Variation in the Global Collection of Chickpea (Cicer arietinum L.). Poster presented in the Generation Challenge Program Annual Research Meeting, 12-16 September 2006, Sao Paulo, Brazil - PDF

Upadhyaya  HD, Varshney RK, Hash CT, Hoisington DA, Gowda CLL, Reddy VG, Chandra S, Lalitha, N, Bharthi A. (2006). Development of composite collection and genotyping of foxtail millet  [Setaria italica (L.) Beauv.] composite collection. Poster presented in the Generation Challenge Program Annual Research Meeting, 12-16 September 2006, Sao Paulo, Brazil - PDF

Upadhyaya  HD, Varshney RK, Hoisington DA, Gowda CLL, Hash CT, Reddy VG, Chandra S, Bharathi A, Lalitha N (2006). Genotyping composite collection of finger millet [Eleusine coracana (L.) Gaertn]. Poster presented in the Generation Challenge Program Annual Research Meeting, 12-16 September 2006, Sao Paulo, Brazil - PDF

Vadez V., Jyotsna  Devi M., Bhatnagar-Mathur P., Serraj R., Sharma K.K.. Evaluation and Deployment of Transgenic Drought-Tolerant Groundnut at ICRISAT. Poster presented at the Annual Review Metting of the Generation CP, Sao Paulo, Brasil, 12-16 Sept 2006.

Vadez V., Krishnamurthy L., Varshney R.K., Serraj R., Jyotsna Devi M., Nigam S.N., Aruna R., Moss B., Seetha Kannan., Hoisington D., Rupa K., Sridevi.,  Chandra S.. Variation in transpiration efficiency in a groundnut (Arachis hypogaea L.) mapping population Poster presented at the Annual Review Metting of the Generation CP, Sao Paulo, Brasil, 12-16 Sept 2006.

2005
Alves A, Fregene M, Ceballos H, Ferguson M, Setter T (2005). Identifying the physiological and genetic traits related to drought tolerance in cassava. Poster presentation at the 2005 GCP Annual Research Meeting, Rome, Italy, 29 September -01 October 2005. - PDF

Balint-Kurti P (2005). Identification and Analysis of Maize QTL for Southern Leaf Blight and Gray Leaf Spot resistance.   Presented at the Maize Genetics meeting. Lake Geneva, WI; March 10-13, 2005. - PDF

Bellotti A, Fregene M, Castelblanco W, Alzate A, Barrera E, Gutierrez JP, Santos LG, Okogbenin E, Egesi C, Okai E, Kawuki R, Alves A, Ceballos H (2005). Development of Low-Cost Technologies for Pyramiding Useful Genes From Wild Relatives of Cassava into Elite Progenitors. Poster presented at the 2005 GCP Annual Research Meeting, 29 September - 1 October 2005, Rome, Italy.

Bennett J, Lakshmi Praba M, Cairns JE, Lafitte HR, Satoh K, Kikuchi S, Ji XM, Raveendran M, Chen JX (2005). Identifying Genes Responsible for Failure of Grain Formation in Rice and Wheat under Drought (SP2-1). Poster presented at the GCP 2005 Annual Research Meeting, 29 September - 1 October 2005, Rome, Italy.

Bonierbale M, Simon R, Portal L, Baum M, Udupa SM  Jia J , Gao L , Roux N, Kumar S, and Heslop-Harrison P (2005) Conserved Genes and Universal Primers in Bananas and Plantain and Toward Diversity Assessment with Orthologous Gene Markers. GCP ARM Rome.  - PDF

Bruce M, Coughlan S, Zhu T, Bordeos A, Wu CJ, He C, Wang GL, Leung H, and Leach JE (2005). Expression profiling and gene localization of rice lesion mimic mutant spl1. Poster presented at the 5th Rice Genetics Symposium, 18-21 November 2005, Manila, Philippines. - PDF

Carrillo G, Reveche M, Goodwin P, Leach J, Leung H, and Vera Cruz C (2005). In silico analysis and molecular characterization of rice oxalate oxidase, a candidate gene associated with quantitative resistance to rice blast. Poster presented at the 5th Rice Genetics Symposium, 18-21 November 2005, Manila, Philippines. - PDF

Carrillo G, Wu J, Liu B, Oña I, Sugiyama N, Variar M, Courtois B, Leach J, Goodwin P, Leung H, and Vera Cruz C (2005). In silico and molecular approaches for associating candidate defense genes with quantitative resistance to rice blast. Poster presented at the Annual Meeting of the American Phytopathological Society, 30 July - 3 August 2005, Austin TX, USA. - PDF

Carrillo G, Wu J, Liu B, Sugiyama N, Oña I, Variar M, Bhatt JC, Javier E, Goodwin P, Courtois B, Leach J, Leung H, and Vera Cruz C (2005). Associating candidate genes with quantitative resistance to rice blast. Poster presented at the 2005 GCP Annual Research Meeting, 29 Sept -1 October 2005 Hilton Hotel, Rome, Italy. - PDF

Collard B, Reveche MYV, Mercado EFL, Chen J, Carrillo MGC, Bernardo M, Wu J, Redoña E, Kadirvel P, Bustamam M, Verdier V, William M, and Vera Cruz CM. (2005). Low cost, non gel-based DNA marker technologies for marker assisted selection in rice. Poster presented at the 5th Rice Genetics Symposium, 18-21 November 2005 Manila, Philippines. - PDF

Furman BJ, Baum M, Hamwieh A, and Jung C (2005). Genotyping a composite germplasm set of lentil. Presented at the 2005 GCP ARM, 29 September - 1 October 2005, Rome, Italy.

Hazekamp T, Bruskiewich R, Chandra S, Courtois B, Davenport G, Endresen D, Gaiji S,  Moonan F,  Simon R, Sood R, Skofic M (2005). Task 26: Development of the GCP Central Repository. Presented at the 2005 GCP Annual Research Meeting, 29 September - 1 October 2005, Rome, Italy. - PDF

Hearne S, Bishop R, Town C, Ferguson M, Hanson J (2005). Generating Stress Response-Enriched EST Resources for Cowpea. Poster presented at the 2005 GCP Annual Research Meeting, 29 Sep -  1 October 2005, Rome, Italy.

Hund A, Pa-In N, Trachsel S, Liedgens M, Fracheboud Y, Stamp P (2005). Root morphology of drought tolerant and drought sensitive maize genotypes. In: Interdrought-II. The 2nd international conference on integrated approaches to sustain and improve plant production under drought stress, 24-28 September 2005, University of Rome "La Sapienza", Rome, Italy.

Lakshmi Praba M, Chandra Babu R, Cairns JE, Lafitte HR (2005). Comparative physiology of rice and wheat under drought. Poster presented at Interdrought II, 26-30 September 2005, Rome, Italy.

Metz T, Bruskiewich R, Mendoza MJ, Valerio R, Davenport D, Simon R (2005). Collaborative Development Platform for GCP Software and Information Systems. Poster presented in the Generation Challenge Programme Annual Research Meeting, 29 September - 1 October, Rome, Italy - PDF

Pa-In N, Trachsel S, Liedgens M, Hund A, and Stamp P (2005). Quantitative trait loci controlling root and shoot traits of maize (Zea mays L.) under drought stress. Phd symposium, 20-21 October 2005, ETH Zurich, Switzerland.

Pa-In N (2005). Quantitative Trait Loci Controlling Root and Shoot Traits of Maize. 25th Anniversary of cooperation between Kasetsart University (KU) and Swiss Federal Institute of Technology (ETH)* - International Conference on Maize Adaptation to Marginal Environments; 6 – 9 March 2005, Kasetsart University, Thailand.

Upadhyaya HD, Pundir RPS, Hash CT, Hoisington DA, Chandra S, Gowda CLL, Singh S, Reddy VG (2005). Genotyping finger millet germplasm – developing composite collection. Poster presented at Generation Challenge Program meeting, 25 September-1 October 2005, Rome, Italy - PDF

Upadhyaya HD, Bhattacharjee R, Pundir RPS, Hoisington DA, Singh S, Reddy KN (2005). Genotyping pigeonpea composite collection using SSR markers. Poster presented at Generation Challenge Program meeting, 25 September-1 October 2005, Rome, Italy - PDF

Upadhyaya HD, Baum M, Dwivedi SL, Udupa SM, Buhariwalla HK, Furman BJ, Chandra S, Hoisington DA, Crouch JH, Gowda CLL, Singh S (2005).  Mining allelic variation associated with beneficial traits in composite collection of chickpea (Cicer arietinum L.). Poster presented at Generation Challenge Program meeting, 25 September-1 October 2005, Rome, Italy - PDF

Upadhyaya HD, Bhattacharjee R, Bertioli D, Hoisington DA, Pundir RPS, Valls JFM, Chandra S, Singh S, Moretzsohn MC, Leal Bertioli S, Guimaraes P (2005). Genotyping groundnut (Arachis hypogaea) composite collection using SSR markers. Poster presented at Generation Challenge Program meeting, 25 September-1 October 2005, Rome, Italy - PDF

Valkoun J, Choumane W, Konopka J, Zhang J, Grando S, Ceccarelli S, Russell J, and Baum M (2005). Composite Germplasm collection of barley for allele mining and crop improvement. Presented at the 2005 GCP Annual Research Meeting, 29 September - 1 October 2005, Rome, Italy.

van Eeuwijk FA, Chapman S, Mathews K, Crossa J, Reynolds M, Ribaut J-M, Vargas M, Bink M, Boer M, and Malosetti M (2005). Eco-physiological models for QTLxE; Integrating statistical and physiological approaches. Presented at the 2005 GCP Annual Research Meeting 29 September - 1 October 2005, Rome, Italy.

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10). Media Coverage and public awareness

2009 
Biofutur (2009). Le séquencage du génome du bananier démarre. Biofutur, 27 November 2009, France. Article

Generation Challenge Programme (2009). GCP launches a public platform for plant molecular breeding in the developing world. Press release, 1 September 2009, Generation Challenge Programme, Mexico. Press release

International Rice Research Institute (IRRI) (2009). Filipino farmers welcome new rice varieties. Press release, 4 June 2009, IRRI, The Philippines. Press release  

International Rice Research Institute (IRRI) (2009). Global team develops tools to unravel diversity of rice. Press release, 24 July 2009, IRRI, The Philippines. Press release

The Max Planck Society (2009). Getting to the bottom of rice. Press release, 23 July 2009,  The Max Planck Society, Germnay. Press release.

University of Arizona (2009). Researchers complete draft genome sequence for cassava. November 2009. Press release

University of California–Riverside (2009). UC Riverside researchers develop genetic map for cowpea, accelerating development of new varieties. Press release, 13 October 2009, University of California–Riverside, USA. Press release

2008
Amuwa D (2008). Scientists restrategize on cassava breeding for emerging markets. Cassava breeding community of practice. Punch Newspapers, 31 October 2008, Nigeria. PDF

McNally KL and Cairns JE (2008). Deciphering the code. Rice Today 7, pp 36-37. PDF

2007
Anonymous (2007). Sh 2 billion project to boost legume production in Africa. Article published in Saturday Standard, Science and Environment section. 3 November 2007, Kenya, p 22. View article

Generation Challenge Programme (2007). Legumes step into the limelight in the tropics. Press release, 15 October 2007, Generation Challenge Programme, Mexico. Press release (full version)   Press release (short version)

Kochian L (2007). Sorghum, one of world's major cereals, may get yield boost as toxicity-tolerant gene is cloned. Article in Cornell Chronicle, 27 August 2007, Cornell University, USA. View article

Kochian L (2007). Interview on the research on the cloning of the sorghum aluminum tolerance gene on nationally broadcast National Public Radio programme, The DNA Files, 6 December 2007. Hear interview

Muranaka S (2007). Creation of drought resistant cowpea. NHK radio world, Japan, 26 August 2007, 17:00-8:30 (Japanese time).

Muranaka S (2007). Agriculture on unstable rain. Nihonkai shinbun, Japan, May 31, 2007. View article

University of Calfornia-Riverside (2007). UCR Researchers Awarded Nearly $1.7 Million to Develop Improved Cowpea Varieties. Press Release, 6 November 2007, UC-R, USA. Press Release

University of California (2007). Research to benefit African farmers. November 2007. Video and text

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11) Academic dissertations and theses

2009
Haouat M (2009). Utilization of PCR-based techniques for detection of transgene tolerant to drought in transgenic plants and analysis of genetic diversity in durum wheat. Maitrise Degree in Science and Techniques dissertation. Abdelmalek Essaâdi University, Tanger, Morocco. 

Marimo P (2009). Gender Impacts of Molecular Assisted Breeding: The Case of Insect and Disease Resistant Cassava in Nigeria. MSc thesis, Virginia Polytechnic Institute and State University, USA.  PDF

Moufak N (2009). Utilization of PCR-based techniques for detection of transgene tolerant to drought in transgenic plants and analysis of genetic diversity in durum wheat. Maitrise Degree in Science and Techniques dissertation. Abdelmalek Essaâdi University, Tanger, Morocco.

Oukhouia M (2009). Utilization of PCR-based techniques for improvement of durum wheat. Maitrise Degree in Science and Techniques dissertation. Sidi Mohamed Ben Abdellah University, Fes, Morocco.

Saifi M (2009). Molecular characterization of improved lines of oats derived from interspecific hybridization and analysis and validation some molecular markers in bread wheat. MSc. thesis, Hassan I University, Settat, Morocco. 


2008
Alpuerto VL (2008). Economic analysis of marker-assisted breeding in rice. MSc thesis, Virginia Polytechnic Institute and State University, USA. PDF.

Basi S (2008). Molecular and histological study of root tissues in relation to phosphorous uptake efficiency and drought tolerance in rice. MSc thesis, Department of Crop Science and Plant Breeding. Agricultural Sciences and Resource Management in Tropics and Subtropics, University of Bonn, Bonn, Germany.

Berra S (2008). In silico analysis of candidate genes of agronomic importance in cereals for molecular marker development. MSc. Thesis, Hassan II University, Casablanca, Morocco.

Molnár I (2008). Production and molecular cytogenetic identification of Triticum aestivum-Aegilops biuncialis interspecific translocations. Ph.D. thesis, Szent István University, Gödöllő, Hungary. PDF

Mulatya CM (2008). Assessing genetic variation for canopy temperature in wheat by linear mixed models. MSc thesis, Hasselt University, Belgium. 40pp.  PDF

Naoufal R (2008). Agromorphological characterization and technological evaluation of genetic resources of durum wheat. MSc. Thesis, Mohammed V University, Rabat, Morocco.

Rudi N (2008). An ex-ante economic analysis of developing low-cost technologies for pyramiding useful genes from wild relatives into progenitors of cassava. MSc thesis, Virginia Polytechnic Institute and State University, USA. PDF

Tignegre JB, Melis R, Tongoona P, Laing M, Ouedraogo J T, Drabo I, Ilboudo D, Neya B J, Ba NM, Diasso GA, Satoru M, Boukar O, Moutari N, Mamadou T and Monneveux P (2008). Identification of cowpea breeding priorities for Striga-prone areas of Burkina Faso. PhD progress report submitted to University of KwaZulu Natal/African Centre for Crop Improvement. 40pp

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