Conference & workshop papers 2006

Alves AAC, Fregene M, Ceballos H, Setter T, Ferguson M, Mkamilo G and Osei C (2006). Identifying the physiological and genetic traits that make cassava one of the most drought tolerant crops. Paper presented at the Annual Research Meeting of the Generation Challenge Programme, 12-16 September 2006, Caesar Business Hotel, São Paulo, Brazil. 

Azhar Mohamad and J.S. Heslop-Harrison  (2006). DNA and Genome Diversity in Bananas and Plantains (Musa). OECD meeting on Plant Domestication, Tsukuba, Japan October 2006

Bakry F, Baurens FC, Heslop-Harrison  J.S, Hippolyte I,  Matsumoto M, Miller R.G,  Rouard M, Roux N, Souza M, Sasaki T (2006). Targeted Musa Genome Sequencing and Frame Map Construction. GCP Annual Research Meeting, Sao Paulo, Brazil

Bennett J, Ji XM, Shobbar ZS, Raveendran M, Liao DQ, Liu JX, Dolferus R, Tuberosa R, Satoh K, Mauleon R, Kikuchi S, Bruskiewich R, Chandra Babu R, Ma ZQ (2006). Identifying genes responsible for failure of grain formation in rice and wheat under drought. Paper presented at the 2006 GCP Annual Research Meeting, 12-16 September 2006, Sao Paulo, Brazil.

Billot C, Hash CT, Ramu P, Folkerstema RT, Upadhyaya HD, Rami J-F, Gardes L, Rivallan R, Deu M, Li Y, Wang T, Lu P (2006). Diversity analysis of the GCP sorghum composite germplasm set based on allelic variation at 41 SSR loci. Paper presented in the Annual meeting of Animal and Plant Genomics, 14-18 January 2006, San Diego, CA, USA. Presentation

Carrillo G, Ona I, Goodwin PH, Variar M, Leach J, Leung H, Vera Cruz C.  (2006). Integrating molecular, phenotypic and in silico approaches for quantitative resistance to rice blast. Paper presented at 6th IE Melhus Graduate Student Symposium, convened by the American Phytopathological Society, 29 July – 2 August 2006, Quebec City, Canada. PDF

Davidson RM, Manosalva P, Vera Cruz C, Leung H, Leach JE (2006). Expression patterns of oxalate oxidase-like genes associated with blast resistance QTL on chromosome 8 of Oryza sativa. Biology of Plant-Microbe Interactions: Proceedings of the 12th International Congress on Molecular Plant-Microbe Interactions, 14-19 December 2005, Merida Yucatan, Mexico.

Ferguson ME, D. Kiambi D, Kawuki R, Salih S, Hash T, and Hoisington D (2007). Tapping Crop Diversity for the Resource Poor in Eastern, Central and Southern Africa. Presented at the Third General Meeting on Biotechnology, Breeding & Seed Systems for African Crops, Rockefeller Foundation, 26-29 March 2007, Joaquim Chissano International Conference Centre, Maputo, Mozambique.  

Fregene M, Okogbenin E, Egesi C, Hurtado P, Santos L, Barrera E, Gutierrez J, Guerrero J, Carabali A, Parkes E, Baguma Y, Kawuki R, and Ceballos H (2007). Recent Advances in Genetic Improvement of Cassava. Paper presented at the 2007 GCP Annual Research Meeting, Benoni, South Africa, 12-16 September  2007.

Hamilton RS, Sie M, Valkoun J, Upadhyaya HD, Mahalkshmi V (2006). The need for allele mining: perspectives of the System-wide Genetic Resources Programme (SGRP). Pages 67-68 in de Vicente M-C, Glaszmann, J-C (eds.) Molecular Markers in Allele Mining. Proceedings of a workshop, 22-26 August 2006, MS Swaminathan Reseach Foundation, Chennai, India. International Plant Genetic Resources Institute, Rome, Italy.

Heinemann AB, Luquet D, Dingkuhn M, Chapman S (2007). Análise da Estratégia de Melhoramento do Milho Safra em Função dos Estresses Hídricos para Goiás. In: 4 Congresso Brasileiro de Melhoramento de Plantas, 2007, São Lourenço. 4 Congresso Brasileiro de Melhoramento de Plantas.

Heinemann AB, Luquet D, Dingkuhn M, Chapman S (2007). Análise da Estratégia de Melhoramento do Arroz Ciclo em Função dos Estresses Hídricos para Goiás. In: 4 Congresso Brasileiro de Melhoramento de Plantas, 2007, São Lourenço. 4 Congresso Brasileiro de Melhoramento de Plantas.

Heinemann AB, Andrade CLT, Gomide, Albuquerque PEP, da Silva S C (2007). Determinação de padrões de estresse hídrico para a cultura do milho safra e safrinha no estado de Goiás. In: XV Congresso Brasileiro de Agrometeorologia, 2007, Aracaju. XV Congresso Brasileiro de Agrometeorologia. 

Hoekenga OE, Magalhaes JV and Kochian LV (2006). Interdisciplinary analysis of aluminum tolerance in maize. Root Genomics Workshop, Plant and Animal Genome XIV Meeting, January 18, 2006, San Diego, CA., USA.

Kikuchi S (2006). Outline and future plans of KOME & RED databases: Plant Ontology Workshop 30 May – 1 June 1 2006, Cornell University, Ithaca, New York, USA. PDF

Kochian LV and Magalhaes JV (2006) Physiological and molecular mechanisms of aluminum resistance in crops. Plenary talk at the CIAT-Embrapa sponsored workshop Advances in improving acid soil adaptation of tropical crops and forages, and management of acid soils, October 18-21, 2005, Brasilia, Brazil.


Kochian LV and Magalhaes, JV (2006). Isolation and Characterization of Aluminum Tolerance Genes in the Cereals: An Integrated Functional Genomic, Molecular Genetic and Physiological Analysis. Paper presented at 2006 Annual Research Meeting of the Generation Challenge Program, Sept 12-17, 2006, Sao Paolo, Brazil.

Kochian LV and Magalhaes, JV (2006). Using Genomic and Genetic Approaches to Elucidate Aluminum Resistance Genes and Mechanisms in Crop Plants. Plenary speaker at the International Symposium on Plant Nutrition meets Plant Breeding, Hohenheim University, Sept 25-28, 2006, Stuttgart, Germany.

Kochian LV and Magalhaes JV (2006). Molecular, genetic and physiological analysis of AltSB – A major aluminum tolerance gene recently identified in sorghum. Invited paper at the International Symposium in Memory of Vincent R. Francheschi, Washington State University, June 7-12, 2006, Pullman WA., USA.

Kochian LV and Magalhaes JV (2006). Molecular, genetic, and physiological analysis of Altsb - a major aluminum tolerance gene recently identified in sorghum. Invited paper at the 23rd Annual Missouri Symposium: Plant Roots: From Genes to Form and Function, at the University of Missouri, May 24-26, 2006, Columbia, MO., USA.

Kochian LV and Magalhaes JV (2006) High resolution mapping, cloning and characterization of a major aluminum tolerance gene using sorghum as a model system. Invited seminar to the Plant Biology Graduate Program Seminar Series, University of Massachusetts,. May 4, 2006, Amherst, MA., USA.

Kochian LV and Magalhaes JV (2006). Map-based cloning and characterization of Altsb, a major aluminum tolerance gene in sorghum. Abiotic Stress Workshp, Plant and Animal Genome XIV Meeting, January 18, 2006, San Diego, CA, USA.

Kumar A, Chamamerk V,  Haefele S, and Atlin G (2006). Germplasm development for drought-prone environments: Progress and implications for CNRM. Paper presented in the Natural Resource management workshop, 8-9 March 2006, organised by International Rice Research Institute, Philippines, Dhaka, Bangladesh.
Paper


Leung H, Liu B, Mauleon R, Qiu F, Carrillo G, Vera Cruz C, Han SS, Roh J, Manosalva, P, Davidson R, Leach J, Satoh K, Kikuchi S (2006). Identifying favorable alleles in host defense genes for broad-spectrum resistance in rice. Paper presented at the International Rice Congress, 9-13 October 2006, New Delhi, India. PDF

Malosetti M, Ribaut J-M, Vargas M, Crossa J, Boer MP and van Eeuwijk FA (2006). Multi-trait multi-environment QTL modelling for drought stress adaptation in maize. Paper presented at workshop Scale and Complexity in Plant Systems Research: Gene-Plant-Crop Relations, 23-26 April 2006, convened by Frontis, Wageningen, The Netherlands. Paper

Malosetti M, Ribaut J-M, Vargas M, Crossa J and van Eeuwijk FA (2006). Multi-trait QTL mixed modelling with an application to drought stress in maize. Paper presented at XIII Meeting of the Biometrics in Plant Breeding Section of Eucarpia, 30 August – 1 September 2006, Zagreb, Croatia. Proceedings

Mathews KL, van Eeuwijk FA, Reynolds M, McIntyre L, Shorter R and Chapman SC (2006). Multi-environment QTL mixed models for drought stress adaptation in wheat. Paper presented at Australasian Genstat/StatGen Conference, 5-8 December 2006, Victor Harbor, Australia. 


Senthilvel S, Baskaran K, Hoisington D, Upadhyaya HD, Hash CT (2006). SSRs and sampling strategy for genotyping heterogeneous pearl millet germplasm accessions. Paper presented in the Annual meeting of Animal and Plant Genomics, 14-18 January 2006, San Diego, CA, USA

Satoh K, Doi K, Nagata T, Hosaka A, Suzuki K, Ji X, Raveendran M, Leung H, Bennett J, Kikuchi S (2006). Gene expression analysis and data mining from the microarray analysis applied to the drought stress in rice. Drought Frontier Project Planning Workshop, 2-6 October 2006, IRRI,  Los Baños, Philippines.
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Takeya M, Suzuki K, Doi K, Kikuchi S, and Bruskiewich R (2006). Development of a platform for functional genomics under the Generation Challenge Program (GCP) The Seventeenth International Conference on Genome Informatics 2006 ():P095-1-2.


Upadhyaya HD, Baum M, Buhariwalla HK, Udupa SM, Furman BJ, Dwivedi SL, Hoisington DH, Gaur PM, Chandra S, Gowda CLL, Crouch JH, Valkoun J (2006). Mining Chickpea Composite Collection for Allelic Variation. Page 25 in de Vicente, M-C, Glaszmann J-C (eds.) Molecular Markers in Allele Mining. Proceedings of a workshop, 22-26 August 2006, MS Swaminathan Reseach Foundation, Chennai, India. International Plant Genetic Resources Institute, Rome, Italy.

van Eeuwijk FA, Malosetti M and Boer MP (2006) Modelling the genetic basis of response curves underlying genotype x environment Interaction. Paper presented at workshop Scale and Complexity in Plant Systems Research: Gene-Plant-Crop Relations, convened by Frontis, 23-26 April 2006, Wageningen, The Netherlands. 
Presentation  Paper

van Eeuwijk FA (2006). An eco-physiological – statistical framework for the analysis of GxE and QTLxE as occurring in abiotic stress trials, with applications to the CIMMYT drought stress programs in tropical maize and bread wheat. Paper presented at the 2006 GCP Annual Research Meeting, 12-16 September 2006, Sao Paulo, Brazil. 

Vera Cruz CM, Cho YC,  Kim BR,  Hong YK,  Kim YH, Yoon DW, Jung KH., Lee JY, Lee SW, Manosalva P, Davidson R, Leach JE, Leung H (2006). Functional genomics approach to identification of broad-spectrum resistance genes against rice blast. Paper presented at the RDA-IRRI Biennial Meeting, 26-27 April 2006, Suwon, Korea.  

Vera Cruz CM, Mercado EFL, Reveche MYV, Chen J, Skinner DJ, Carrillo MGC, Collard BCY, Bernardo M, William M, and Xu Y (2006). Development of low-cost gene-based trait assay technologies in cereals. Paper presented at the 2006 GCP Annual Research Meeting, 12-16 September 2006, Sao Paolo, Brazil.

Warburton M, Dreisigacker S, Crossa J, Franco J, and Taba S (2006). Determination of population structure of the CIMMYT maize collection. Paper presented during the ‘Closing the Circle on Plant Genetic Resources Conservation and Utilization: I’ Symposium at the ASA–CSSA–SSA Annual Meetings, 12–16 November 2006, Indianapolis, USA. 
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